BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0171.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0993 [C] COG1902 NADH Vch Vibrio cholerae                          122   2e-28
PA1334 [C] COG1902 NADH Pae Pseudomonas aeruginosa                     97   1e-20
YPO2379 [C] COG1902 NADH Ype Yersinia pestis                           93   2e-19
STM1436 [C] COG1902 NADH Sty Salmonella typhimurium LT2                92   3e-19
nemA [C] COG1902 NADH Eco Escherichia coli K12                         88   5e-18

>VCA0993 [C] COG1902 NADH Vch Vibrio cholerae
          Length = 367

 Score =  122 bits (307), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 70/104 (67%)

Query: 1   MAALDIGYVHFAEVDWDAEPNVPEEFRALARAIFPNLIIVAGNYTKQRADWVLDTSYADL 60
           + A DI Y+H +E DWD  P +PE FR   R  F N IIVAG YT +RA+ VL   YADL
Sbjct: 258 LQARDIAYLHLSEADWDDAPTIPESFRIELRKHFTNAIIVAGRYTLERAEEVLQKGYADL 317

Query: 61  VAFGRLFIANPDFPARLRDNLPLNKIRPDFLFGGGAEGYTDYPR 104
           VAFGR F+ANPD  +RL+   PL ++    LFGGG +GYTDYP+
Sbjct: 318 VAFGRPFVANPDLVSRLKHQQPLAQLDGKTLFGGGEQGYTDYPK 361


>PA1334 [C] COG1902 NADH Pae Pseudomonas aeruginosa
          Length = 370

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 60/100 (60%)

Query: 4   LDIGYVHFAEVDWDAEPNVPEEFRALARAIFPNLIIVAGNYTKQRADWVLDTSYADLVAF 63
           + + Y+H AE DW+  P +P  F+   R ++   +I +G YTK RA+  L   +ADLV F
Sbjct: 264 IGVAYIHIAEADWEDAPAMPAAFKEALRIVYRGSLIYSGMYTKARAEEALARGWADLVGF 323

Query: 64  GRLFIANPDFPARLRDNLPLNKIRPDFLFGGGAEGYTDYP 103
           GR FIANPD P RL  +L L        FGGGA GYTDYP
Sbjct: 324 GRPFIANPDLPYRLEHDLALADGDRSTYFGGGAAGYTDYP 363


>YPO2379 [C] COG1902 NADH Ype Yersinia pestis
          Length = 365

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 63/99 (63%)

Query: 5   DIGYVHFAEVDWDAEPNVPEEFRALARAIFPNLIIVAGNYTKQRADWVLDTSYADLVAFG 64
           +I Y+H +E DW       + FRA  RA F  +I+ AG Y+ ++A+ ++   + D VAFG
Sbjct: 265 NIAYLHISEPDWAGGKPYSDTFRAAVRAHFNGVIVGAGAYSAEKAECLIQKGFIDAVAFG 324

Query: 65  RLFIANPDFPARLRDNLPLNKIRPDFLFGGGAEGYTDYP 103
           R +I+NPD   RL+ + PLN+   +  +GGGA+GYTDYP
Sbjct: 325 RSYISNPDLVTRLQQHAPLNEPDSNTFYGGGAKGYTDYP 363


>STM1436 [C] COG1902 NADH Sty Salmonella typhimurium LT2
          Length = 365

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 60/98 (61%)

Query: 6   IGYVHFAEVDWDAEPNVPEEFRALARAIFPNLIIVAGNYTKQRADWVLDTSYADLVAFGR 65
           I Y+H +E DW       + FR   RA F   II AG YT ++A+ +++    D VAFGR
Sbjct: 266 IAYLHMSEPDWAGGEPYSDAFREKVRARFHGPIIGAGAYTPEKAEDLIEKGLIDAVAFGR 325

Query: 66  LFIANPDFPARLRDNLPLNKIRPDFLFGGGAEGYTDYP 103
            +IANPD  ARL+    LN  RP+  +GGGAEGYTDYP
Sbjct: 326 DYIANPDLVARLQRKAELNPQRPESFYGGGAEGYTDYP 363


>nemA [C] COG1902 NADH Eco Escherichia coli K12
          Length = 365

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 58/98 (59%)

Query: 6   IGYVHFAEVDWDAEPNVPEEFRALARAIFPNLIIVAGNYTKQRADWVLDTSYADLVAFGR 65
           I Y+H +E DW       + FR   RA F   II AG YT ++A+ ++     D VAFGR
Sbjct: 266 IAYLHMSEPDWAGGEPYTDAFREKVRARFHGPIIGAGAYTVEKAETLIGKGLIDAVAFGR 325

Query: 66  LFIANPDFPARLRDNLPLNKIRPDFLFGGGAEGYTDYP 103
            +IANPD  ARL+    LN  R +  +GGGAEGYTDYP
Sbjct: 326 DWIANPDLVARLQRKAELNPQRAESFYGGGAEGYTDYP 363