BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0165.p         (258 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3174 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer...    87   3e-17
VCA0029 [K] COG1414 Transcriptional regulator Vch Vibrio cholerae      79   1e-14

>PA3174 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 242

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 12/224 (5%)

Query: 3   TDRSLSVLRLFTLETPAWTVEQIARTLEVSMSTAYRYVLALEEVGLVASSGG-GYYILGP 61
           TDR L +L        A + ++++ TL   +S+ YR++  L   GL     G G Y+ GP
Sbjct: 7   TDRLLQILIALGQAPEALSAKELSLTLGQPLSSTYRHLKTLLRWGLAEEQAGQGRYLPGP 66

Query: 62  AILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTRGPQSL 121
           A LQL ++      L+  A+P + RLA  + + SV L+  A     +C+    +  PQ L
Sbjct: 67  ACLQLAKKFDREASLIGLAKPELKRLADLSQE-SVALMV-ASNQQAICLELFDS--PQPL 122

Query: 122 -ISYERGRPMPLLRGATSRIILAHEPTRRLKRLYERHQEELRSSGMADSWEQFRSQQSQL 180
              Y++G   PLL GA+++ +LAH    R + LY      L     A+  ++   +   +
Sbjct: 123 RCCYQKGLAQPLLHGASAKALLAHLEDERREELY------LAQELSAERIDKLEQELRLI 176

Query: 181 RKTGYAVSFGEIDPDRIGIAVALLGEARQPIGSLSFVLPGSAGQ 224
           R+ GYAVS GEID    GI+V LL   ++  G+LS + P    Q
Sbjct: 177 REQGYAVSQGEIDEGVWGISVPLLDSRQRLHGALSLMAPALRAQ 220


>VCA0029 [K] COG1414 Transcriptional regulator Vch Vibrio cholerae
          Length = 244

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 118/220 (53%), Gaps = 14/220 (6%)

Query: 3   TDRSLSVLRLFTLETPAWTVEQIARTLEVSMSTAYRYVLALEEVGLVASS-GGGYYILGP 61
            ++SL +L    +     + + ++  L+V +S+ YR++  L+E  L+  S      I+GP
Sbjct: 12  NEKSLQLLMQVAVNPEPVSAKGLSEQLQVPLSSLYRHLKLLKEWNLIEESPHDKTLIIGP 71

Query: 62  AILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTRGPQSL 121
           A L L R  + +   L +   V++RL     + +  ++   +    LC+ Q  +   Q+L
Sbjct: 72  AALLLMRSYETSQHNLDAVEAVLSRLQKQTGEMAAYMVPVGY--RALCVSQRESM--QAL 127

Query: 122 -ISYERGRPMPLLRGATSRIILAHEPTRRLKRLYERHQEELRSSGMADSWEQFRSQQSQL 180
             S+ +G+  PLLRGA+S+++LA+ P  R +++       LR  G   + ++++S+  ++
Sbjct: 128 RCSFVQGQSQPLLRGASSKVMLAYMPAARCEKI-------LRYFGEDPTLDKWQSEFEKI 180

Query: 181 RKTGYAVSFGEIDPDRIGIAVALLGEARQPIGSLSFVLPG 220
           R+ GYAVS  EIDP   GI+  ++ +  + IG++S + P 
Sbjct: 181 RRHGYAVSTSEIDPGVSGISAPVM-KGSKLIGAISVMAPA 219