BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0153.p         (419 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MT3146 [K] COG2186 Transcriptional regulators MtC Mycobacterium ...    82   2e-15
Rv3060c [K] COG2186 Transcriptional regulators Mtu Mycobacterium...    82   3e-15

>MT3146 [K] COG2186 Transcriptional regulators MtC Mycobacterium
           tuberculosis CDC1551
          Length = 510

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 53/83 (63%)

Query: 41  KAACIIAAQIEEDLIGRSWPTGTIYGSETHLESKFGVCRSVVREAVRILESRGTARMRRG 100
           K A  IA +IE D++ R WP G   GSE+ L+ +F V RSV+REAVR++E    ARMRRG
Sbjct: 32  KRASKIARRIEADIVRRGWPIGASLGSESALQQRFCVSRSVLREAVRLVEHHQVARMRRG 91

Query: 101 PNGGLLILAPSMSLVLEAIDRYV 123
           PNGGL I  P+      A+  Y+
Sbjct: 92  PNGGLFICEPNAGPATRAVVIYL 114



 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 36  GSANTKAACIIAAQIEEDLIGRSWPTGTIYGSETHLESKFGVCRSVVREAVRILESRGTA 95
           G+   K A ++AA I +D+    W  G+++G+ET L  ++ V R+V+REAVR+LE    A
Sbjct: 281 GAPRGKLAEVLAATIGDDIAASGWQVGSVFGTETALLERYQVSRAVLREAVRLLEYHAIA 340

Query: 96  RMRRGPNGGLLILAPSMSLVLEAIDRYVTSHCRELHRGKDGRTILQAVHARLIGPGAKNC 155
            MRRGP GGL++  P     ++ I  Y+    R+  R +D R +  A+    +    K  
Sbjct: 341 HMRRGPGGGLVVTTPQPQASIDTIALYL--QYRKPSR-EDLRCVRDAIEIDNVAKVVKRR 397

Query: 156 VGPGLASFLEEM 167
             P +ASFL+ +
Sbjct: 398 SEPEVASFLDTL 409


>Rv3060c [K] COG2186 Transcriptional regulators Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 490

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 53/83 (63%)

Query: 41  KAACIIAAQIEEDLIGRSWPTGTIYGSETHLESKFGVCRSVVREAVRILESRGTARMRRG 100
           K A  IA +IE D++ R WP G   GSE+ L+ +F V RSV+REAVR++E    ARMRRG
Sbjct: 12  KRASKIARRIEADIVRRGWPIGASLGSESALQQRFCVSRSVLREAVRLVEHHQVARMRRG 71

Query: 101 PNGGLLILAPSMSLVLEAIDRYV 123
           PNGGL I  P+      A+  Y+
Sbjct: 72  PNGGLFICEPNAGPATRAVVIYL 94



 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 36  GSANTKAACIIAAQIEEDLIGRSWPTGTIYGSETHLESKFGVCRSVVREAVRILESRGTA 95
           G+   K A ++AA I +D+    W  G+++G+ET L  ++ V R+V+REAVR+LE    A
Sbjct: 261 GAPRGKLAEVLAATIGDDIAASGWQVGSVFGTETALLERYQVSRAVLREAVRLLEYHAIA 320

Query: 96  RMRRGPNGGLLILAPSMSLVLEAIDRYVTSHCRELHRGKDGRTILQAVHARLIGPGAKNC 155
            MRRGP GGL++  P     ++ I  Y+    R+  R +D R +  A+    +    K  
Sbjct: 321 HMRRGPGGGLVVTTPQPQASIDTIALYL--QYRKPSR-EDLRCVRDAIEIDNVAKVVKRR 377

Query: 156 VGPGLASFLEEM 167
             P +ASFL+ +
Sbjct: 378 SEPEVASFLDTL 389