BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0142.p (262 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3481 [MU] COG1538 Outer membrane protein Ype Yersinia pestis 98 2e-20 ylcB [MU] COG1538 Outer membrane protein Eco Escherichia coli K12 95 1e-19 ZylcB [MU] COG1538 Outer membrane protein EcZ Escherichia coli O... 94 3e-19 ECs0610 [MU] COG1538 Outer membrane protein Ecs Escherichia coli... 94 3e-19 AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tu... 94 5e-19 >YPO3481 [MU] COG1538 Outer membrane protein Ype Yersinia pestis Length = 468 Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 132/246 (53%), Gaps = 8/246 (3%) Query: 11 ISLVTLAAMLAACAGPRPGQPEQAAVTLPAQWREPLASTQGISLSRWWEAFADPVLNQLV 70 I +++L A+LA C P ++ +PA AS+ + W E DP L Q++ Sbjct: 5 ILILSLPALLAGCISLDPDY-QRPVAPVPATLPYSTASSSKAADIPWQETIIDPKLRQVI 63 Query: 71 DQVLAGNSDLAMAAARVQQARASSRLATAQRMPSLSASGMGAHQG-----DVDAFGHARV 125 L N DL A A ++ ARA + A ++P+++A G+ +G D + + Sbjct: 64 ALALESNRDLRQAIADIEAARAQYGVQRAAQIPTVNA-GVNGSRGRGLSDTSDGNNNTAI 122 Query: 126 QDAWQAELSLS-YELDLFGRLADQDAAARASLLATDAARSTLRLALIATATSTYIALRAQ 184 ++ A+ S+S +ELDLFG+ + A + LAT+ A T R+ LIA + ++ L A Sbjct: 123 SQSYGAQASVSAFELDLFGKKSSLSHAEFETYLATEEAAKTTRITLIADTATAWVTLAAD 182 Query: 185 QARLEVLDQTLEMRAQSLQLARRRAQQGYASRLEVEQSQSEYAATEQLIASTRMSISRNE 244 Q +L + ++TL+ QSL+LA+ R + G ASR++V ++ Y + +A + ++++++ Sbjct: 183 QNQLLLAEETLKSAEQSLKLAQLRQKNGIASRIDVAAMETLYQSARADVAQYKTTVAQDK 242 Query: 245 HALALL 250 +AL LL Sbjct: 243 NALDLL 248 >ylcB [MU] COG1538 Outer membrane protein Eco Escherichia coli K12 Length = 457 Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 57 WWEAFADPVLNQLVDQVLAGNSDLAMAAARVQQARASSRLATAQRMPSLSASGMGAHQGD 116 W F D + L+ + L N DL MA +VQ+ARA RL A R P L+ G G+ G+ Sbjct: 54 WRTFFVDNQVKTLISEALVNNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGN 113 Query: 117 VDAFGHARVQDAWQAELSLSYELDLFGRLADQDAAARASLLATDAARSTLRLALIATATS 176 + G+ + L+ S++LD FGRL + A R + LAT+ A+ + + L++ Sbjct: 114 LK--GNTATTREFSTGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLVSNVAQ 171 Query: 177 TYIALRAQQARLEVLDQTLEMRAQSLQLARRRAQQGYASRLEVEQSQSEYAATEQLIAST 236 +Y + A+L++ ++TL QS ++ G ++ L +EQ++ +T IA Sbjct: 172 SYFNQQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKR 231 Query: 237 RMSISRNEHALALLAXRLHSHEHQPQ 262 + +++ +AL LL L S+ PQ Sbjct: 232 QGELAQANNALQLL---LGSYGKLPQ 254 >ZylcB [MU] COG1538 Outer membrane protein EcZ Escherichia coli O157:H7 EDL933 Length = 460 Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 57 WWEAFADPVLNQLVDQVLAGNSDLAMAAARVQQARASSRLATAQRMPSLSASGMGAHQGD 116 W F D + L+ + L N DL MA +VQ+ARA RL A R P L+ G G+ G+ Sbjct: 54 WRTFFVDNQVKTLISEALENNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGN 113 Query: 117 VDAFGHARVQDAWQAELSLSYELDLFGRLADQDAAARASLLATDAARSTLRLALIATATS 176 + G + + L+ S++LD FGRL + A R + LAT+ A+ + + L++ Sbjct: 114 LK--GDSATTREFSTGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLVSNVAQ 171 Query: 177 TYIALRAQQARLEVLDQTLEMRAQSLQLARRRAQQGYASRLEVEQSQSEYAATEQLIAST 236 +Y + A+L++ ++TL QS ++ G ++ L +EQ++ +T IA Sbjct: 172 SYFNQQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKR 231 Query: 237 RMSISRNEHALALLAXRLHSHEHQPQ 262 + +++ +AL LL L S+ PQ Sbjct: 232 QGELAQANNALQLL---LGSYGKLPQ 254 >ECs0610 [MU] COG1538 Outer membrane protein Ecs Escherichia coli O157:H7 Length = 460 Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 57 WWEAFADPVLNQLVDQVLAGNSDLAMAAARVQQARASSRLATAQRMPSLSASGMGAHQGD 116 W F D + L+ + L N DL MA +VQ+ARA RL A R P L+ G G+ G+ Sbjct: 54 WRTFFVDNQVKTLISEALENNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGN 113 Query: 117 VDAFGHARVQDAWQAELSLSYELDLFGRLADQDAAARASLLATDAARSTLRLALIATATS 176 + G + + L+ S++LD FGRL + A R + LAT+ A+ + + L++ Sbjct: 114 LK--GDSATTREFSTGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLVSNVAQ 171 Query: 177 TYIALRAQQARLEVLDQTLEMRAQSLQLARRRAQQGYASRLEVEQSQSEYAATEQLIAST 236 +Y + A+L++ ++TL QS ++ G ++ L +EQ++ +T IA Sbjct: 172 SYFNQQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKR 231 Query: 237 RMSISRNEHALALLAXRLHSHEHQPQ 262 + +++ +AL LL L S+ PQ Sbjct: 232 QGELAQANNALQLL---LGSYGKLPQ 254 >AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 513 Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 7/236 (2%) Query: 19 MLAACA-GPRPGQPEQAAVTLPAQWREPLASTQG-ISLSRWWEAFADPVLNQLVDQVLAG 76 +L+ C GP PE + LP ++ E ++ G IS WW AF D LN V L Sbjct: 43 LLSGCVVGPDHQTPE---IQLPGKFAEAGKTSNGDISTVAWWNAFNDSRLNGYVSTGLTQ 99 Query: 77 NSDLAMAAARVQQARASSRLATAQRMPSLSASGMGAHQGDVDAF--GHARVQDAWQAELS 134 N + A R+ QA+++ +A A +PSL+++ QG + + V + + Sbjct: 100 NLTVLQAIERINQAQSNITVAGAGSLPSLTSTFRHQTQGSGGSLPSTNDNVTNTTSNAFN 159 Query: 135 LSYELDLFGRLADQDAAARASLLATDAARSTLRLALIATATSTYIALRAQQARLEVLDQT 194 + + LDLFG+ +A ASL A A + RL LI+ TS YI +R Q RL + Q Sbjct: 160 VGWLLDLFGQYRRAQESAGASLDAAYATANVQRLTLISAVTSAYIDVRYYQERLAIARQN 219 Query: 195 LEMRAQSLQLARRRAQQGYASRLEVEQSQSEYAATEQLIASTRMSISRNEHALALL 250 L R ++L L + + G ASRL+V QS+ +T + + + R H +A L Sbjct: 220 LGSRRETLSLTKLQLDAGAASRLDVVQSEGLVNSTLAQMPALETNFRRAAHRIATL 275