BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0141.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 114 2e-25 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 114 2e-25 RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 110 2e-24 RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 107 2e-23 PA4597 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 107 3e-23 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 115/231 (49%), Gaps = 20/231 (8%) Query: 5 RNEHALALSAGLQALTLPAFRPDQPAA---------------LLRQRPDIFQAEQQLVAA 49 RN L + A + A LP PD AA LL++RPDI QAE L AA Sbjct: 250 RNALVLLVGADVPAELLPRSLPDPSAASGSVLATIPPGLASDLLQRRPDILQAEHDLKAA 309 Query: 50 DHTLDAARAALMPSLRIGLSGGVVGSNL---LPDPLSIFSAGGSILAPLLDGGRLRAQAD 106 + + AARAA PS+ + S G ++L ++S G I P+ DGG RA D Sbjct: 310 NANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGVWSFGPQISLPIFDGGANRANLD 369 Query: 107 ATAARRDEAAYAYQKAVLVAWRDVEDALAAARGAQAQQQAVQEQEV-ALREALAMSRKRY 165 A RD A Y+KA+ A+R+V DAL A RG +Q Q+ V A ++ ++ R+ Sbjct: 370 IANASRDIALAQYEKAIQTAFREVSDAL-AQRGTLGRQLDAQQSLVDATSDSYQLATARF 428 Query: 166 RAGYSPYLEQLDAQRGLLSAQLLEVQARADRLSAMVSLAQALGGGWEAERG 216 + G YL LD+QR L +AQ + R RL+ + + + LGGGW G Sbjct: 429 KRGVDSYLNVLDSQRSLYTAQQNLINTRLSRLTNLATFYKTLGGGWVETSG 479 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 11/191 (5%) Query: 29 PAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSGGVVGSNLLPDPLSIFSAG 88 P+ LL++RPDI +AE QL+AA+ ++ AARAA PS+ + + G + L +F AG Sbjct: 282 PSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLS----GLFDAG 337 Query: 89 G-------SILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRDVEDALAAARGAQ 141 SI P+ G LRA D ++D Y+KA+ A+++V D LAA Sbjct: 338 SGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFT 397 Query: 142 AQQQAVQEQEVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLEVQARADRLSAMV 201 Q QA ++ A E ++ KRYR G YL LDAQR L +AQ + R ++L++ V Sbjct: 398 EQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEV 457 Query: 202 SLAQALGGGWE 212 +L +ALGGGW Sbjct: 458 NLYKALGGGWN 468 >RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 514 Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 112/209 (53%), Gaps = 10/209 (4%) Query: 26 PDQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSGGVVGS---NLLPDPL 82 P P+ LL QRPDI QAEQ+LVAA+ + ARAA PSL + + G + +L Sbjct: 293 PGLPSELLEQRPDIRQAEQKLVAANANIGVARAAFFPSLGLTSNVGTASTALHDLFKSGT 352 Query: 83 SIFSAGGSILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRDVEDALAAARGAQA 142 ++S ++ P+ + G D T A + A Y+K + A+++V DAL A RG Sbjct: 353 GLWSFVPNLTLPIFNWGTNVFNLDLTKANQKIAVANYEKTIQTAFQEVSDALVA-RGTLD 411 Query: 143 QQQAVQEQ-EVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLEVQARADRLSAMV 201 +Q A Q++ A E L +S +RYR G S +L+ LDAQR L SA VQ R RL+ V Sbjct: 412 EQVAAQKRFRDATAERLTLSDQRYRNGVSSFLDVLDAQRDLFSADQTLVQTRLARLTNAV 471 Query: 202 SLAQALGGGWEAERGQDLSPQASSSLARP 230 L ALGGG Q+ S ++ ARP Sbjct: 472 DLYTALGGGL-----QEHSTTVAAQQARP 495 >RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 508 Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/198 (38%), Positives = 109/198 (55%), Gaps = 5/198 (2%) Query: 21 LPAFRPDQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSGGVVG---SNL 77 LP + P+ +L +RPDI AE+++ A+ + A+AA P+L +G S G+ S L Sbjct: 293 LPDIPLEIPSTVLERRPDIAAAERRVAQANANIGVAKAAYFPTLTLGASAGLSANTLSRL 352 Query: 78 LPDPLSIFSAGGSILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRDVEDALAAA 137 P I+S G ++ A L +GG L A + A D A Y++ VL A++DVED LAA Sbjct: 353 ATLPSRIWSIGPTLAATLFEGGALNAAVNKAGAAYDAAVGTYRQTVLGAFQDVEDNLAAL 412 Query: 138 RGAQAQQQAVQEQEV-ALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLEVQARADR 196 R QAQ+ VQ V + +EA + RYRAG +LE + AQ +A+ + + R Sbjct: 413 RW-QAQEFDVQNDAVQSAQEAAQLDLNRYRAGTISFLEVITAQATAYTAERTLLTLQGKR 471 Query: 197 LSAMVSLAQALGGGWEAE 214 SA V L +ALGGGW E Sbjct: 472 YSAAVLLVKALGGGWHGE 489 >PA4597 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 11/197 (5%) Query: 26 PDQPAALLRQRPDIFQAEQQLVAADHTLDAARAALMPSLRIGLSGGVVGSNLLPDPLSIF 85 P P+ L+ +RPDI AE +L A + + AARAA P RI L+G S+ + +F Sbjct: 277 PGTPSELIERRPDILAAEHRLRARNADIGAARAAFFP--RISLTGSFGTSS--AEMSGLF 332 Query: 86 SAGG-------SILAPLLDGGRLRAQADATAARRDEAAYAYQKAVLVAWRDVEDALAAAR 138 G ++ P+ DGGR RA AR+D A AY+ + A+R+V DALAA+ Sbjct: 333 DGGSRSWSFLPTLTLPIFDGGRNRANLSLAEARKDSAVAAYEGTIQTAFREVADALAASD 392 Query: 139 GAQAQQQAVQEQEVALREALAMSRKRYRAGYSPYLEQLDAQRGLLSAQLLEVQARADRLS 198 + +++A++ + EAL +++ RY +G +L LDAQR ++ + R Sbjct: 393 TLRREEKALRALANSSNEALKLAKARYESGVDNHLRYLDAQRSSFLNEIAFIDGSTQRQI 452 Query: 199 AMVSLAQALGGGWEAER 215 A+V L +ALGGGW+ R Sbjct: 453 ALVDLFRALGGGWDEGR 469