BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0140.p         (253 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2482 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa         100   4e-21
PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa          97   2e-20
SMb21367 Non COG                                                       91   3e-18
PA2257 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa          90   5e-18
VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae                 88   2e-17

>PA2482 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa
          Length = 217

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 58  ACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREG-RRVYPPMNYLVSYLPDAYLK 116
           ACVTCHG  G G +   FPR+AG PAAYL  QL   ++G  R +P M  +   L D  ++
Sbjct: 40  ACVTCHGADGMGLAAAGFPRLAGLPAAYLSKQLHDLKQGGSREHPVMKGIADALGDDEIQ 99

Query: 117 EIADYFAAQ---RPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHGKQLTGML 173
            +A+  AA    +P   +  A P S      G TL  +G     IP CV CHG   +G+ 
Sbjct: 100 ALANTLAAMPAPKPVELSRVATPRSP-----GETLAVRGAWERNIPECVTCHGPAGSGVG 154

Query: 174 PGIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDISAVAGWLA 227
              P L G    Y++ QL  W++G R     D M  IA  L++ +I +V+ + A
Sbjct: 155 EAFPPLQGQGEMYLSNQLRAWQLGTRRNDPNDLMGHIAKSLSEEEIRSVSQFFA 208


>PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa
          Length = 201

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 8/170 (4%)

Query: 59  CVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYLVSYLPDAYLKEI 118
           C  CHG  G   +   FP++AG+   YL  Q+   ++G+R    M  L++ L D  L +I
Sbjct: 34  CGACHGADGNSPAPN-FPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADI 92

Query: 119 ADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHGKQLTGM-LPGIP 177
           A YFA+Q+       A P    +  +G  L + G  A G+PAC  CH     G+   G P
Sbjct: 93  AAYFASQK--MSVGMADP---NLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFP 147

Query: 178 GLAGLKPAYIAGQLTRWRVGERVA-AEPDCMKRIATRLTDSDISAVAGWL 226
            L G    Y+A QLT +R G R    +   M+ IA +L++ DI+A++ ++
Sbjct: 148 HLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYI 197


>SMb21367 Non COG
          Length = 374

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 56  MQACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYLVSYLPDAYL 115
           + AC  CH ++G GT+ +  PR+AG P AYL   L  + +G R    M  +   L +  +
Sbjct: 190 LTACGRCHEREGTGTNGDRIPRLAGLPEAYLLRSLQEYAKGTRPSGAMEPVADLLSEDAM 249

Query: 116 KEIADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHGKQLTGMLPG 175
           +E+A +++A RP     +A P       RG  +  +G A  G+PAC++CH  + +     
Sbjct: 250 RELAAHYSALRPTAGNQSAPP-DPEQLRRGEAIANRGIAHQGVPACLSCHSGRQSQQF-- 306

Query: 176 IPGLAGLKPAYIAGQLTRWRVGERVAAE-PDCMKRIATRLTDSDISAVAGWLAQQPAPDN 234
            P LAG    YI  Q+  WR G R+       M  +A  L ++ I  VA +L   P    
Sbjct: 307 -PVLAGQHAEYIQEQIRLWRRGGRIGTPYGRIMTAVAGALDEAQIEDVAAYLGSLPPGSA 365

Query: 235 AAP 237
            AP
Sbjct: 366 TAP 368


>PA2257 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa
          Length = 215

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 59  CVTCHGQQGQG--TSDEYFPRIAGKPAAYLYNQLLAFREGRRVYPPMNYLVSYLPDAYLK 116
           C  CH   G G    +  +P++AG    YLY Q+   +  RR  P  N     L  A + 
Sbjct: 44  CSRCHDDDGNGGPRPNRSYPKLAGLDREYLYKQIYDLKTQRRRNPATNGRGEELSAADVV 103

Query: 117 EIADYFAAQR-PAFETTAARPLSAPMAERGRTLVQQGDAAHGIPACVACHGKQLTGMLP- 174
            ++ +FAAQR  A E T A P      ERGR L + G A  G+P CV CHG    G+   
Sbjct: 104 NVSAWFAAQRMSAGEQTLADPR---QRERGRQLFENGLAQRGVPPCVTCHGPAAQGLAAL 160

Query: 175 GIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDISAVAGWLA 227
             P LAG    Y+A QL  +R G+R       M+ +A  L DS I A+AG+L 
Sbjct: 161 KAPRLAGQWAEYLATQLHGFRDGKR--GNSATMRAVAGGLEDSHIQALAGYLG 211


>VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae
          Length = 223

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 49  LDSMEARMQACVTCHGQQGQGTSDEYFPRIAGKPAAYLYNQLLAFREGR-------RVYP 101
           +++ +A+   C  CHG  G  +    +P++AG+   YL  QL   + G        R  P
Sbjct: 40  IEAGKAKSLTCAACHGADGN-SPLTIYPKLAGQHEKYLEKQLKELKLGASSGGKQGRYDP 98

Query: 102 PMNYLVSYLPDAYLKEIADYFAAQRPAFETTAARPLSAPMAERGRTLVQQGDAAHGIPAC 161
            M+ +   L D  + ++A Y+A+   +  TT    ++     +G+ L   GDA+ G+ AC
Sbjct: 99  VMSAMAMPLSDEDIADLAAYYASMPISGNTTPEDVVA-----QGKVLYTAGDASRGLTAC 153

Query: 162 VACHGKQLTGM-LPGIPGLAGLKPAYIAGQLTRWRVGERVAAEPDCMKRIATRLTDSDIS 220
           +ACHG +  G  L G P ++G    YI  QL ++R G R     + M+ +A +LTD+DI 
Sbjct: 154 IACHGPRGNGTELSGFPKISGQHADYIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADID 213

Query: 221 AVAGWLA 227
            ++ ++ 
Sbjct: 214 ILSKYVG 220