BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0135.p         (195 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae                 95   8e-20
RSc2987 [C] COG2863 Cytochrome c553 Rso Ralstonia solanacearum         90   3e-18
PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa          88   1e-17
DR2487 [C] COG2863 Cytochrome c553 Dra Deinococcus radiodurans         86   3e-17
PA2482 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa          79   7e-15

>VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae
          Length = 223

 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 89/183 (48%), Gaps = 26/183 (14%)

Query: 23  GATLALACTMCHGVQGHS-RSDAPGLAGQFPEVIIKQLADYRSGK-------RSNAVMGA 74
           G   +L C  CHG  G+S  +  P LAGQ  + + KQL + + G        R + VM A
Sbjct: 43  GKAKSLTCAACHGADGNSPLTIYPKLAGQHEKYLEKQLKELKLGASSGGKQGRYDPVMSA 102

Query: 75  LARTLSERDAADLAAYFASLPRPAQAGGLADSAVPR--------LVQVGDPLRNIAPCIS 126
           +A  LS+ D ADLAAY+AS+P       ++ +  P         L   GD  R +  CI+
Sbjct: 103 MAMPLSDEDIADLAAYYASMP-------ISGNTTPEDVVAQGKVLYTAGDASRGLTACIA 155

Query: 127 CHG---GADRKIGAPWLDGLPRHYLAEQLALFKRGERANDAMLQMRNVAHAMREDEISAI 183
           CHG         G P + G    Y+  QL  F+ G RAND    MR+VAH + + +I  +
Sbjct: 156 CHGPRGNGTELSGFPKISGQHADYIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADIDIL 215

Query: 184 ADY 186
           + Y
Sbjct: 216 SKY 218


>RSc2987 [C] COG2863 Cytochrome c553 Rso Ralstonia solanacearum
          Length = 219

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 29  ACTMCHGVQGHSRSDA-PGLAGQFPEVIIKQLADYRSG-KRSNAVMGALARTLSERDAAD 86
           ACT CHG  G+S ++A P LAGQ    I KQL D+++  +R+  VM   A  LS++D  D
Sbjct: 52  ACTSCHGPGGNSTANANPKLAGQHAAYIEKQLKDFKAKTERNQPVMSLYAGALSDQDMKD 111

Query: 87  LAAYFASLP--RPAQAGGLADSAV-PRLVQVGDPLRNIAPCISCHGGADRKIGA--PWLD 141
           + AY A  P  +P+ A       +  +L + GD  R IA C  CHG A   I A  P + 
Sbjct: 112 IGAYIAKQPAWKPSSAKNKDTIELGQKLYRGGDAKRGIAACAGCHGPAGAGIPAQYPRIG 171

Query: 142 GLPRHYLAEQLALFKRGERANDAMLQMRNVAHAMREDEISAIADYYA 188
           G    Y   QL  F+ G R+N   +QM ++A  M   +I A+ADY A
Sbjct: 172 GQFAEYTEAQLVAFQNGSRSNS--VQMHDLAGRMTALQIKAVADYIA 216


>PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa
          Length = 201

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 18/169 (10%)

Query: 30  CTMCHGVQGHSRS-DAPGLAGQFPEVIIKQLADYRSGKRSNAVMGALARTLSERDAADLA 88
           C  CHG  G+S + + P LAGQ    ++KQ+ D + GKR+   M  L   LS++D AD+A
Sbjct: 34  CGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADIA 93

Query: 89  AYFASLPRPAQAGGLADSAVPRLVQVGDPL-------RNIAPCISCHGGADRKI---GAP 138
           AYFAS        G+AD   P LV  G+ L         +  C  CH  +   I   G P
Sbjct: 94  AYFASQKMSV---GMAD---PNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFP 147

Query: 139 WLDGLPRHYLAEQLALFKRGERANDAMLQ-MRNVAHAMREDEISAIADY 186
            L G    Y+A+QL  F+ G R ND   + M+++A  +   +I+AI+ Y
Sbjct: 148 HLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSY 196


>DR2487 [C] COG2863 Cytochrome c553 Dra Deinococcus radiodurans
          Length = 229

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 87/184 (47%), Gaps = 19/184 (10%)

Query: 16  TPQAVGRGATLALACTMCHGVQGHS-RSDAPGLAGQFPEVIIKQLADYRSGKRSNAVMGA 74
           TP A  RGA +A  C  CHG  G S ++D P LAGQ P     QLA +R+  R + VM  
Sbjct: 47  TPSA-ARGAAIAGTCAGCHGKTGVSVQADIPSLAGQIPNYTQFQLAAFRAKLRPSNVMQQ 105

Query: 75  LARTLSERDAADLAAYFASLPRPAQAGGLADSAVP-------RLVQVGDPLRNIAPCISC 127
           +A  LS++D ADL+AY+A     AQA G A  A P       +L   GDP RN+  C  C
Sbjct: 106 VASKLSDQDIADLSAYYA-----AQAVGPAWKAEPAARARGQKLFTAGDPARNVIACAVC 160

Query: 128 HGGADRKIGAPWL---DGLPRHYLAEQLALFKRGERANDAM--LQMRNVAHAMREDEISA 182
           HG   R + A  +     LP  Y  E L  F         +    MR     + + ++  
Sbjct: 161 HGSNGRGLNANHIASVTNLPPEYALEVLKEFHEAPTFGGLVPPETMRIAVKPLTDKDLKD 220

Query: 183 IADY 186
           +A Y
Sbjct: 221 VATY 224


>PA2482 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa
          Length = 217

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 27  ALACTMCHGVQGHSRSDA--PGLAGQFPEVIIKQLADYRSG-KRSNAVMGALARTLSERD 83
           A AC  CHG  G   + A  P LAG     + KQL D + G  R + VM  +A  L + +
Sbjct: 38  AAACVTCHGADGMGLAAAGFPRLAGLPAAYLSKQLHDLKQGGSREHPVMKGIADALGDDE 97

Query: 84  AADLAAYFASLPRPAQAGGLADSAVPR-----LVQVGDPLRNIAPCISCHGGADRKIGA- 137
              LA   A++P P     L+  A PR     L   G   RNI  C++CHG A   +G  
Sbjct: 98  IQALANTLAAMPAPKPVE-LSRVATPRSPGETLAVRGAWERNIPECVTCHGPAGSGVGEA 156

Query: 138 -PWLDGLPRHYLAEQLALFKRGERANDAMLQMRNVAHAMREDEISAIADYYA 188
            P L G    YL+ QL  ++ G R ND    M ++A ++ E+EI +++ ++A
Sbjct: 157 FPPLQGQGEMYLSNQLRAWQLGTRRNDPNDLMGHIAKSLSEEEIRSVSQFFA 208