BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0099.p (258 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1831 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp... 288 7e-78 all5044 [E] COG3842 ABC-type spermidine/putrescine transport sys... 171 1e-42 CAC0840 [E] COG3842 ABC-type spermidine/putrescine transport sys... 169 8e-42 YPO3627 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 167 2e-41 CC3134 [E] COG3842 ABC-type spermidine/putrescine transport syst... 167 3e-41 >CC1831 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Ccr Caulobacter vibrioides Length = 253 Score = 288 bits (738), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 138/242 (57%), Positives = 175/242 (72%) Query: 1 MSYIEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 M+ + RNVW +YG VVLE + L + +G F ++VG SG GKSTFLRL++GQE P++G + Sbjct: 1 MALLSFRNVWVEYGDKVVLENVELSIAQGSFVSIVGPSGAGKSTFLRLVIGQEAPTRGAI 60 Query: 61 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRAREE 120 L+G+ AEP RGVVFQ+YSVFPHL+ DNV GL+ S L G+L G +R A E+ Sbjct: 61 DLEGRNLRAEPGPDRGVVFQKYSVFPHLSARDNVVFGLDCAGSALRGKLSGAKRRAALEQ 120 Query: 121 AAQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 A +L VGLG + DLYP+ +SGGMQQRLAIAQALI +PR+LLLDEPFGALDPG+R +MH Sbjct: 121 ADAMLAAVGLGDSGDLYPAKMSGGMQQRLAIAQALIKKPRILLLDEPFGALDPGVRLDMH 180 Query: 181 ALLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA 240 L+ LW+D+GLT+ MVTHD+ E F LGTR+L FDK R DP P YGA YD L++ Sbjct: 181 ELITSLWRDNGLTIMMVTHDIKEAFKLGTRVLAFDKRRRDPHAPHRYGATAVYDFPLDKP 240 Query: 241 RA 242 A Sbjct: 241 GA 242 >all5044 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Nos Nostoc sp. PCC 7120 Length = 381 Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 134/219 (61%), Gaps = 11/219 (5%) Query: 4 IEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 +E+RNV++ + Q + ++L V +G+F +++G SGCGK+T LRL+ G E+ G+LL+Q Sbjct: 22 VELRNVFKFFNQEPAVHGVDLDVRQGEFFSILGPSGCGKTTTLRLIAGFEQVDAGKLLIQ 81 Query: 64 GQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRAREEA 121 GQP P R V VFQ Y++F HLNV DNVA GL L +S K Sbjct: 82 GQPMTNIPPYRRPVNTVFQSYALFNHLNVWDNVAFGLRLKKS---------RKSEVESRV 132 Query: 122 AQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHA 181 + L V + +PS LSGG QQR+A+A+AL+ RP V+LLDEP GALD +RKEM Sbjct: 133 KEALKLVKMESLRSRFPSQLSGGQQQRVALARALVNRPAVVLLDEPLGALDLKLRKEMQV 192 Query: 182 LLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD 220 L +L K+ GLT MVTHD E +L R+ V ++ +++ Sbjct: 193 ELSNLHKNLGLTFVMVTHDQEEALSLSDRIAVMNQGKIE 231 >CAC0840 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Cac Clostridium acetobutylicum Length = 352 Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 87/215 (40%), Positives = 131/215 (60%), Gaps = 11/215 (5%) Query: 4 IEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 IE++NV ++YG+N V++ LNL V +F T +G SGCGK+T L ++ G E P +G ++ + Sbjct: 7 IELKNVSKKYGENYVIKNLNLFVRRNEFLTFLGPSGCGKTTTLNMIAGFETPDEGNIIFE 66 Query: 64 GQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRAREEA 121 P R + VFQ+Y++F H+NV +NVA GL + + P +++ REE Sbjct: 67 DSSINIVPPHKRQINTVFQKYALFSHMNVYENVAFGLRIKKLP---------EKQIREEV 117 Query: 122 AQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHA 181 ++L V L SLSGG QQR+AIA+AL+ +P++LLLDEP GALD +RKEM Sbjct: 118 EKMLSLVDLKGFEKRSTDSLSGGQQQRVAIARALVNKPKLLLLDEPLGALDLKLRKEMQL 177 Query: 182 LLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDK 216 L ++ + G+T VTHD E T+ ++V +K Sbjct: 178 ELKNIQQKLGITFIFVTHDQEEALTMSDTIVVLNK 212 >YPO3627 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Ype Yersinia pestis Length = 271 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/250 (41%), Positives = 141/250 (56%), Gaps = 29/250 (11%) Query: 4 IEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 I + ++ ++YG VL+ L LR+ GQF +VG SGCGKST LRLL G E S G LL Sbjct: 13 ITLESIGKRYGNRTVLDNLQLRITAGQFVAVVGRSGCGKSTLLRLLAGLEAASDGTLLSG 72 Query: 64 GQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRAREEAAQ 123 D TR ++FQ + P V+DNV +GL + R+EA Q Sbjct: 73 NALLSHAKDETR-LMFQEARLLPWKKVIDNVGLGL---------------RGHWRDEALQ 116 Query: 124 LLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHALL 183 +L VGL + +P++LSGG +QR+A+A+ALI RPR+LLLDEP GALD R EM L+ Sbjct: 117 VLDTVGLADRANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQGLI 176 Query: 184 LDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEARAR 243 LW+ G TV +VTHD+SE L R+L+ ++ R I D+A++ R R Sbjct: 177 ERLWQQHGFTVLLVTHDVSEAIALADRVLLIEEGR------------IGLDLAIDLPRPR 224 Query: 244 EQAD-KLASL 252 + KLA+L Sbjct: 225 RKGSAKLAAL 234 >CC3134 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Ccr Caulobacter vibrioides Length = 381 Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 131/216 (60%), Gaps = 13/216 (6%) Query: 4 IEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 I NV +++G+ ++ ++L V EG+F L+G SGCGK+T LR+L G E P++G++L+ Sbjct: 15 ITFENVTKRFGKLAAVDNVSLTVNEGEFFALLGPSGCGKTTLLRMLAGFETPTEGRILID 74 Query: 64 GQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRAR-EE 120 GQ P R V VFQ Y+VFPH+ V DNVA GL++ P A+R AR E Sbjct: 75 GQDISNVPPNKRPVNMVFQSYAVFPHMTVADNVAYGLKVDNVP-------KAEREARVAE 127 Query: 121 AAQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 A +L+ GLG P LSGG +QR+A+A+AL+ RPRVLLLDEP ALD +R++M Sbjct: 128 ALELVQLGGLGGR---KPDQLSGGQRQRVALARALVKRPRVLLLDEPLSALDAKLREQMR 184 Query: 181 ALLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDK 216 L L + G+T MVTHD E L +R V K Sbjct: 185 TELCTLQEKVGITFIMVTHDQDEALALASRCAVMSK 220