BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0061.p (185 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0633 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia sol... 277 1e-74 XF1733 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastid... 248 4e-66 XF1133 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastid... 244 8e-65 RSc2207 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia sol... 148 8e-36 AGl1309 [R] COG0655 Multimeric flavodoxin WrbA Atu Agrobacterium... 111 7e-25 >RSc0633 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia solanacearum Length = 190 Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 122/181 (67%), Positives = 158/181 (87%) Query: 1 MNISIVFDSGYGHTEKLAQSVARGVEEVAGAHATLVPLAAGSVDWAAIAASDAIIFGSPT 60 M++SI++DSGYGHT+K A+++A GV + GA A L+ LA +DW A+A SDAIIFGSPT Sbjct: 1 MSVSIIYDSGYGHTKKQAEAIAEGVRQTPGAEAVLIALANDEIDWEALAGSDAIIFGSPT 60 Query: 61 YNGTISARFKQFMEDSTRQAWIPQTWRNKVAAGFTNSGALHGDKLNSLVTLALFAAQHGM 120 YNG++SARFK+FMEDSTR+AW+PQ WRNK+AAGFTNSGA+HGDKL+SLVT+ALFAAQHGM Sbjct: 61 YNGSVSARFKKFMEDSTRKAWMPQLWRNKIAAGFTNSGAMHGDKLHSLVTMALFAAQHGM 120 Query: 121 LWTGVDLFPGKSGDELNRIGGWLGAMAQSDDAPAEITPGASDLATAAYLGKRVAEVAAQF 180 +W G+DLFPGK+ +++NR+GGWLGAMAQS+D E++P ASDL+TA +LG+RVAE+ QF Sbjct: 121 IWVGLDLFPGKTANDMNRVGGWLGAMAQSNDESPELSPIASDLSTARHLGRRVAEITRQF 180 Query: 181 A 181 + Sbjct: 181 S 181 >XF1733 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastidiosa 9a5c Length = 192 Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 120/189 (63%), Positives = 149/189 (78%), Gaps = 6/189 (3%) Query: 1 MNISIVFDSGYGHTEKLAQSVARGVEEVAGAHATLVPLAAGSVDWAAIAASDAIIFGSPT 60 M ISIV+DSGYGHTE+ A++VA GV +V GA A L+ + G +DW+A+ ASDAI+FGSPT Sbjct: 1 MLISIVYDSGYGHTERQARAVAEGVAKVPGAQAKLITVGQGEMDWSALEASDAIVFGSPT 60 Query: 61 YNGTISARFKQFMEDSTRQAWIPQTWRNKVAAGFTNSGALHGDKLNSLVTLALFAAQHGM 120 YNG++SA+ KQF EDST+ AW Q WRNK+AAGFTNSGA HGDKLN+L+ +ALFAAQHGM Sbjct: 61 YNGSLSAKLKQFFEDSTKAAWSEQKWRNKIAAGFTNSGAQHGDKLNTLIGMALFAAQHGM 120 Query: 121 LWTGVDLFPGKSG-----DELNRIGGWLGAMAQSD-DAPAEITPGASDLATAAYLGKRVA 174 +W G+DL PG S ++LNR G WLGAMAQS+ D +++P ASDL TAAYLG+RVA Sbjct: 121 IWVGLDLMPGNSSSTGSVEDLNRHGAWLGAMAQSNMDEGPDVSPPASDLKTAAYLGQRVA 180 Query: 175 EVAAQFARG 183 E +FARG Sbjct: 181 ETTQRFARG 189 >XF1133 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastidiosa 9a5c Length = 189 Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 118/187 (63%), Positives = 145/187 (77%), Gaps = 8/187 (4%) Query: 1 MNISIVFDSGYGHTEKLAQSVARGVEEVAGAHATLVPLAAGSVDWAAIAASDAIIFGSPT 60 M ISIV+DSGYGHT ++A++VA GV+E+ GA L+ +A GSV+W + SDAIIFGSPT Sbjct: 1 MLISIVYDSGYGHTAQVAKAVAAGVQEIKGADVRLMAVADGSVEWEILEKSDAIIFGSPT 60 Query: 61 YNGTISARFKQFMEDSTRQAWIPQTWRNKVAAGFTNSGALHGDKLNSLVTLALFAAQHGM 120 YNG ISA+ KQF EDST+Q W+PQ WRNK+AAGFTNSGA HGDKLNSL+++ LFAAQHGM Sbjct: 61 YNGLISAKLKQFFEDSTKQVWVPQKWRNKIAAGFTNSGAQHGDKLNSLMSMVLFAAQHGM 120 Query: 121 LWTGVDLFPGK-----SGDELNRIGGWLGAMAQ--SDDAPAEITPGASDLATAAYLGKRV 173 +W G+DL PG S ++LNR+G WLG M Q +D+AP EI P ASDL TA YLG+RV Sbjct: 121 IWVGLDLMPGNNSSTGSPNDLNRLGSWLGVMTQANNDEAP-EIAPPASDLKTAQYLGRRV 179 Query: 174 AEVAAQF 180 AE +F Sbjct: 180 AETVRRF 186 >RSc2207 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia solanacearum Length = 190 Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 82/188 (43%), Positives = 119/188 (63%), Gaps = 8/188 (4%) Query: 3 ISIVFDSGYGHTEKLAQSVARGVEEVAGAHATLVPLA-AGSVDWAAIAASDAIIFGSPTY 61 +++V+ SGYGHT+K A++V GV + AGA A L+ +A WA +A DAI+FG+PTY Sbjct: 4 VAVVYHSGYGHTKKQAEAVFAGV-QAAGAEAHLISVADVNDQTWALLAGVDAIVFGAPTY 62 Query: 62 NGTISARFKQFMEDSTRQAWIPQTWRNKVAAGFTNSGALHGDKLNSLVTLALFAAQHGML 121 G +S FK+F D++ +AW W++K+AAGFTNS +++GDK S+ L + QHGM+ Sbjct: 63 MGGVSGDFKKF-ADASSKAWFTGQWKDKIAAGFTNSASMNGDKYASIQYLWTLSQQHGMI 121 Query: 122 WTGVDLFPGKSG----DELNRIGGWLGAMAQS-DDAPAEITPGASDLATAAYLGKRVAEV 176 W G + P S +++N +GG+ GA++Q+ DA E P DL TA G+RV V Sbjct: 122 WVGTGMMPASSKAATRNDINYMGGFGGALSQAPSDASPEEGPLPGDLETARLFGERVVAV 181 Query: 177 AAQFARGR 184 QF RGR Sbjct: 182 TRQFVRGR 189 >AGl1309 [R] COG0655 Multimeric flavodoxin WrbA Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 193 Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 11/184 (5%) Query: 2 NISIVFDSGYGHTEKLAQSVARGVEEVAGAHATLVPLAAGSVDWAAIAASDAIIFGSPTY 61 N +V+ SGYGHT ++A++VA G E HA WAA+ A+DAIIFG+PTY Sbjct: 8 NTVVVYHSGYGHTHRMAEAVAEGAEATL--HAIDAEGNLSEDGWAALDAADAIIFGTPTY 65 Query: 62 NGTISARFKQFMEDSTRQAWIPQTWRNKVAAGFTNSGALHGDKLNSLVTLALFAAQHGML 121 G S +FK+F D++ + W W++KV GFTNS +L+GDKLN+L L L A QHG L Sbjct: 66 MGGPSWQFKKF-ADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGL 124 Query: 122 WTGVDLFPG--KSG--DELNRIGGWLGAMAQS--DDAPAEITPGASDLATAAYLGKRVAE 175 W + + P KS ++ NR+G ++ MAQS D AP E++ G DL TA G RVA Sbjct: 125 WVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSVG--DLETARLYGARVAN 182 Query: 176 VAAQ 179 VA Q Sbjct: 183 VARQ 186