BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0057.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF1752 [K] COG0583 Transcriptional regulator Xfa Xylella fastidi... 449 e-126 PA2220 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 422 e-118 RSc0205 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 421 e-117 RSp1471 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 337 3e-92 SMa1493 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 329 6e-90 >XF1752 [K] COG0583 Transcriptional regulator Xfa Xylella fastidiosa 9a5c Length = 324 Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/302 (70%), Positives = 253/302 (83%), Gaps = 1/302 (0%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M +RNLNDLL FVT+AREGSFTRAAA LGVTQSALSQAI GLE RLQIRLLTRTTRS+S Sbjct: 1 MARRNLNDLLYFVTIAREGSFTRAAAHLGVTQSALSQAINGLEARLQIRLLTRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+ +IG+RFDEIE+ELD LT LR+KP GTVRITCGD +++ +LPKL PLL++Y Sbjct: 61 TAAGERLLNAIGHRFDEIESELDELTELRDKPAGTVRITCGDHILRTTILPKLTPLLREY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PDI +EFD++Y RDIVADRFDAGVR G TID+DMIAVPIGPPLRM +AASPEYF +PV Sbjct: 121 PDINIEFDVNYGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPPLRMAIAASPEYFASHPV 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P+DL+ +CIN RM +SGG+YVWDF + G+++NVRVDG LIFNT P +DAAL GLG Sbjct: 181 PKKPHDLLNHNCINMRMQTSGGIYVWDFMRRGKQLNVRVDGQLIFNTTPNMVDAALVGLG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALRY-ESRP 299 + LPE++ ++E G+L+RVLEDWC F GY LYYPSRRQPSPAFSLVV+ALRY E RP Sbjct: 241 IAALPEEEFAPHIEEGRLMRVLEDWCEPFSGYFLYYPSRRQPSPAFSLVVDALRYSEGRP 300 Query: 300 RQ 301 + Sbjct: 301 SK 302 >PA2220 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 306 Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/300 (70%), Positives = 250/300 (83%), Gaps = 1/300 (0%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 MIKRNLNDLL FV VAREG+FTRAAA LGVTQSALSQ+I GLE RLQIRLLTRTTRS+S Sbjct: 1 MIKRNLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+ +IGNRFDEIEAELD L+ALR+KP GTVRITCGD + + +LLP+L PLL +Y Sbjct: 61 TAAGERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PDIK+EFD++Y RDIVADRFDAGVR G TID+DMIAVPIGPP+RM V A+P YF +P Sbjct: 121 PDIKVEFDINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPK 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P DL+ +CIN RM S GGLY WDF++ +NVRVDG LIFNT P +DAALAGLG Sbjct: 181 PRSPRDLVDHNCINMRMQSGGGLYAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALRYESRPR 300 + LPE++ ++E G+L+RVLE+WCP+F GY+LYYP+RRQPSPAFSLVV+ALRY +RPR Sbjct: 241 IAWLPEEEFAPHIEEGRLLRVLENWCPLFPGYYLYYPNRRQPSPAFSLVVDALRY-TRPR 299 >RSc0205 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/294 (68%), Positives = 237/294 (80%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M + NLNDLL FVTVAREGSFTRAAA LGVTQSALSQ + GLE RL+IRLLTRTTRS+S Sbjct: 1 MPRHNLNDLLAFVTVAREGSFTRAAAKLGVTQSALSQTVSGLETRLKIRLLTRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+Q+IG+RFDEIE+EL+ALT LR+KP GTVRITCGD +I+ LLPKL PLL +Y Sbjct: 61 TAAGERLLQAIGHRFDEIESELEALTELRDKPAGTVRITCGDQIIRTTLLPKLMPLLHEY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PDIKLE D++Y RDIVADRFDAGVR+ T+D+DMIAV IGP +RM V ASP YF ++P Sbjct: 121 PDIKLELDINYGFRDIVADRFDAGVRFSGTVDKDMIAVRIGPDMRMAVVASPAYFAKHPA 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P DL+ CIN R P+ GGL VW+FE+ G K+ +RVDG L+ NT P AA+ GLG Sbjct: 181 PKTPRDLVHHQCINIRFPTYGGLDVWEFERRGRKLKIRVDGQLVVNTTPHIAAAAVGGLG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALR 294 V LPED+ +LE G+LVRVLEDWCP F GYHLYYPSRRQPSPAF+LV++ALR Sbjct: 241 VAYLPEDEFWPHLEEGRLVRVLEDWCPPFSGYHLYYPSRRQPSPAFALVLDALR 294 >RSp1471 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 297 Score = 337 bits (863), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 167/294 (56%), Positives = 209/294 (71%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M + N +DLL F+ VARE SFTRAAA LGV+ SALS +R LE RL IRLLTRTTRS+S Sbjct: 1 MARENYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTVRALETRLGIRLLTRTTRSVSP 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL+QSI RF+EI+AEL A+ LR+ P GTVRIT D I+ +L PKL+ +L Y Sbjct: 61 TEAGERLLQSIAPRFEEIDAELAAIGELRDTPSGTVRITTTDYAIRTLLWPKLSKVLHDY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PD+K+EF Y L DIVA+R+D GVR G T+ +DMIA I P LRMV+ +P Y R+P Sbjct: 121 PDVKVEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAARIAPDLRMVIVGAPAYLKRHPA 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P P DL A CIN R+P+ GG+Y W+ +K +I VRVDG L FN V +DAAL+G G Sbjct: 181 PKTPQDLTAHRCINLRLPTRGGVYAWELKKGQREIQVRVDGQLTFNGVYEILDAALSGYG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALR 294 + +PED Q ++ +G+L VLEDW P F GYH+YYPSRRQ S A +LV++ALR Sbjct: 241 LAYMPEDLAQPHVAAGRLKWVLEDWFPTFPGYHVYYPSRRQSSRALTLVIDALR 294 >SMa1493 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 307 Score = 329 bits (843), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 155/303 (51%), Positives = 212/303 (69%) Query: 1 MIKRNLNDLLGFVTVAREGSFTRAAATLGVTQSALSQAIRGLEERLQIRLLTRTTRSISL 60 M K + NDLL F+ VA E SFTRAAA LG+TQS LS I+ LE R+ +RLLTRTTRS+++ Sbjct: 1 MPKEDFNDLLWFLAVAEERSFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAV 60 Query: 61 TPAGERLIQSIGNRFDEIEAELDALTALREKPGGTVRITCGDGMIQRVLLPKLAPLLQQY 120 T AGERL++S+ R I E+ AL A R+KP GTV+IT D ++ ++ PKL P+L +Y Sbjct: 61 TEAGERLLRSLAPRISAIRDEIAALMAFRDKPSGTVKITLSDHALESLVWPKLQPVLLEY 120 Query: 121 PDIKLEFDMSYALRDIVADRFDAGVRWGKTIDRDMIAVPIGPPLRMVVAASPEYFTRYPV 180 PDI+LE R+IV D FDAG+R G+++++DMIAV IGP R++ ASP+Y P+ Sbjct: 121 PDIRLELSRDNGFRNIVEDGFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPL 180 Query: 181 PLHPNDLMAQDCINQRMPSSGGLYVWDFEKDGEKINVRVDGSLIFNTVPPQIDAALAGLG 240 P HP +L+ +CIN R + GG YVW+FEK+G+++ VRVDG L FN+ P +DAAL G G Sbjct: 181 PEHPQELIQHNCINSRQATGGGHYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHG 240 Query: 241 VVLLPEDDLQSYLESGQLVRVLEDWCPVFEGYHLYYPSRRQPSPAFSLVVNALRYESRPR 300 + LPED + ++ +G+LV +LE W P F GY++YYPSR SPAF ++V+ALR+ P Sbjct: 241 IAYLPEDLVAGHIAAGRLVALLEPWSPPFAGYYIYYPSRHHNSPAFKVIVDALRHHGTPD 300 Query: 301 QPG 303 G Sbjct: 301 SEG 303