BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0056.p (415 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2219 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aer... 462 e-130 XF1749 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidi... 459 e-129 Z0348 [G] COG2814 Arabinose efflux permease EcZ Escherichia coli... 451 e-126 ECs0311 [G] COG2814 Arabinose efflux permease Ecs Escherichia co... 451 e-126 RSc0207 [G] COG2814 Arabinose efflux permease Rso Ralstonia sola... 414 e-115 >PA2219 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aeruginosa Length = 402 Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust. Identities = 257/397 (64%), Positives = 300/397 (75%), Gaps = 5/397 (1%) Query: 13 TTSSLQ-ASETPVQA-HWGGVFAMTLTAFALVASEFMPVSLLTPIAQDLGVSEGLAGQAI 70 TT +L A+E P Q+ W GV A+ + AFALVASEF+PVSLLTPIA DLG +EG+AGQ I Sbjct: 2 TTRALDTANENPEQSGSWSGVLAIAVCAFALVASEFLPVSLLTPIANDLGTTEGMAGQGI 61 Query: 71 SVSGAFAVLTSLSIARLAGQLPRKTLLLWLTALMLISGPVIALAPNYPVYMAGRVLIGIA 130 ++SGAFAVLTSL I+ +AG L RKTLLL LTA M +SG ++ALAPNY VYM GR LIGI Sbjct: 62 AISGAFAVLTSLFISSVAGSLNRKTLLLGLTAAMGMSGAIVALAPNYFVYMLGRALIGIV 121 Query: 131 IGGFWSMSAAAAIRLVPPHEVARALAVFNGGNALATVVAAPLGSYLGALIGWRGAFLCLA 190 IGGFWSMSAA A+RLVP ++V RALA+ NGGNALATVVAAPLG++LG LIGWRGAFLCL Sbjct: 122 IGGFWSMSAATAMRLVPANDVPRALALVNGGNALATVVAAPLGAWLGTLIGWRGAFLCLV 181 Query: 191 PVALLALLWQALSLPAMRPAARHTAPTH---PLALLATPLVALGMAGVSLLFMGQFTLFT 247 PVAL+AL WQ +LP+MR AR P + ALL P V LGM SL FMGQF+LFT Sbjct: 182 PVALVALAWQWTTLPSMRAGARAPGPGNVFTVFALLKRPGVMLGMLASSLFFMGQFSLFT 241 Query: 248 YLRPFLESETRVQVQTLSLILLAIGVAGFIGTTLIGRLLRRSFYGTLVFIPLLMAVIAMA 307 Y+RPFLE+ T V +SL+LL IG AGFIGT LI R+L+R F+ TLV IPLLMA+IA+ Sbjct: 242 YVRPFLETVTGVHGAHVSLVLLVIGAAGFIGTLLIDRVLQRRFFQTLVAIPLLMALIALV 301 Query: 308 LVACGHHVLPVSLLLALWGLVATAAPVGWWSWVARTLPHDAEAGGGLMVALVQLAIGLGS 367 L G V +LL LWGL T+APVGWW+W+AR P DAEAGGGL VA+VQL+I LGS Sbjct: 302 LTVLGGWPAIVVVLLGLWGLTGTSAPVGWWAWIARVFPEDAEAGGGLFVAVVQLSIALGS 361 Query: 368 TLGGLLFDHGGHHITFFASAGVLLAAALAAALTARED 404 TLGGLLFD G+ TFFASA +LL AA LTAR Sbjct: 362 TLGGLLFDRTGYQATFFASAAMLLIAAFLTILTARSK 398 >XF1749 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidiosa 9a5c Length = 409 Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust. Identities = 245/406 (60%), Positives = 304/406 (74%), Gaps = 12/406 (2%) Query: 9 SSSCTTSSLQASETPVQA-----HWGGVFAMTLTAFALVASEFMPVSLLTPIAQDLGVSE 63 +++ TT SETP +A W GVFAM++ AFAL+ASEF+PVSLLTP+A+DL V+E Sbjct: 2 TANVTTVPQDDSETPNEAPAQVASWSGVFAMSVCAFALIASEFLPVSLLTPMARDLQVTE 61 Query: 64 GLAGQAISVSGAFAVLTSLSIARLAGQLPRKTLLLWLTALMLISGPVIALAPNYPVYMAG 123 G+ GQ I++SGAFAVLTSL I+ LAG L RKTLLL LT M +SG ++ALAPNY +YM G Sbjct: 62 GMTGQGIAISGAFAVLTSLFISALAGSLNRKTLLLGLTLAMGVSGAIVALAPNYAIYMLG 121 Query: 124 RVLIGIAIGGFWSMSAAAAIRLVPPHEVARALAVFNGGNALATVVAAPLGSYLGALIGWR 183 R LIG+ +GGFWSMSAA AIR+VP +V RALA+ NGGNALATVVAAP+G+YL +IGWR Sbjct: 122 RALIGVVVGGFWSMSAATAIRMVPKRDVPRALAIVNGGNALATVVAAPMGAYLSTVIGWR 181 Query: 184 GAFLCLAPVALLALLWQALSLPAMRPAARHTAPT-----HPLALLATPLVALGMAGVSLL 238 GAFLCL PV+L+AL WQ +LP+M AAR AP L P V +GM SLL Sbjct: 182 GAFLCLVPVSLIALAWQWKTLPSMPAAAR--APGIGQVFKVFTLFKHPGVVVGMLASSLL 239 Query: 239 FMGQFTLFTYLRPFLESETRVQVQTLSLILLAIGVAGFIGTTLIGRLLRRSFYGTLVFIP 298 FMGQF LFTY+RPFLE+ T V T+SL LL +G AGFIGT LIGR+L+RSFY T++ IP Sbjct: 240 FMGQFGLFTYVRPFLETVTNVHGATISLFLLVLGAAGFIGTVLIGRVLQRSFYQTMIVIP 299 Query: 299 LLMAVIAMALVACGHHVLPVSLLLALWGLVATAAPVGWWSWVARTLPHDAEAGGGLMVAL 358 +LMA+ A+AL+A G V V +LLALWGL T+APVGWW+W+A+ P DAEAGGGL VA+ Sbjct: 300 VLMALTALALIAFGSSVAIVLVLLALWGLTGTSAPVGWWAWIAKVFPKDAEAGGGLFVAV 359 Query: 359 VQLAIGLGSTLGGLLFDHGGHHITFFASAGVLLAAALAAALTARED 404 VQ++I LGST+GG+LFDH G+ TF ASA +L A+ +TAR+ Sbjct: 360 VQMSIALGSTVGGILFDHSGYRTTFVASAVLLAICAVLTVVTARQS 405 >Z0348 [G] COG2814 Arabinose efflux permease EcZ Escherichia coli O157:H7 EDL933 Length = 397 Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust. Identities = 244/394 (61%), Positives = 300/394 (76%), Gaps = 2/394 (0%) Query: 15 SSLQASETPVQAH--WGGVFAMTLTAFALVASEFMPVSLLTPIAQDLGVSEGLAGQAISV 72 S+L + +P H WGG+FAMTL F L+ASEFMPVSLLTPIA+DLGV+EGLAG+ I++ Sbjct: 2 STLSQTPSPHHQHAYWGGIFAMTLCVFVLIASEFMPVSLLTPIARDLGVTEGLAGRGIAI 61 Query: 73 SGAFAVLTSLSIARLAGQLPRKTLLLWLTALMLISGPVIALAPNYPVYMAGRVLIGIAIG 132 SGA AVLTSL+++ LAG++ RK LLL +T LM +SG +IALA +Y +YM GR +IG+AIG Sbjct: 62 SGALAVLTSLTLSTLAGKMNRKFLLLGMTVLMAVSGLIIALATSYLMYMVGRAMIGVAIG 121 Query: 133 GFWSMSAAAAIRLVPPHEVARALAVFNGGNALATVVAAPLGSYLGALIGWRGAFLCLAPV 192 GFWSMSAA AIRLVP H+V RALA+FN GNALATVVAAPLGSYLGA +GWRGAFLCL P+ Sbjct: 122 GFWSMSAATAIRLVPQHQVTRALAIFNAGNALATVVAAPLGSYLGATVGWRGAFLCLVPM 181 Query: 193 ALLALLWQALSLPAMRPAARHTAPTHPLALLATPLVALGMAGVSLLFMGQFTLFTYLRPF 252 A++A +WQ +SLP+M HT+ L + +V +GM L FMGQF LFTY+RPF Sbjct: 182 AVVAFIWQCISLPSMDANKSHTSCGAVFRLFSRRMVVVGMIACGLFFMGQFALFTYVRPF 241 Query: 253 LESETRVQVQTLSLILLAIGVAGFIGTTLIGRLLRRSFYGTLVFIPLLMAVIAMALVACG 312 LES TRV LSLILL IGVAGFIGT ++ L R Y TL+ IP LMAVIA+ L+ G Sbjct: 242 LESVTRVNSLGLSLILLIIGVAGFIGTLVVSIFLNRKCYPTLMAIPGLMAVIAIGLMLTG 301 Query: 313 HHVLPVSLLLALWGLVATAAPVGWWSWVARTLPHDAEAGGGLMVALVQLAIGLGSTLGGL 372 HHV VSLLL LWG++ATAAP GWW+W+ARTLP +AEAGGGLMVA++QL+I LGST GG+ Sbjct: 302 HHVWMVSLLLGLWGMLATAAPTGWWTWIARTLPDNAEAGGGLMVAVIQLSIALGSTAGGI 361 Query: 373 LFDHGGHHITFFASAGVLLAAALAAALTAREDRG 406 +FD G TF S+ +LL A + +TAR+ G Sbjct: 362 VFDRLGWQSTFAMSSVLLLCAGVLTFVTARQKAG 395 >ECs0311 [G] COG2814 Arabinose efflux permease Ecs Escherichia coli O157:H7 Length = 397 Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust. Identities = 244/394 (61%), Positives = 300/394 (76%), Gaps = 2/394 (0%) Query: 15 SSLQASETPVQAH--WGGVFAMTLTAFALVASEFMPVSLLTPIAQDLGVSEGLAGQAISV 72 S+L + +P H WGG+FAMTL F L+ASEFMPVSLLTPIA+DLGV+EGLAG+ I++ Sbjct: 2 STLSQTPSPHHQHAYWGGIFAMTLCVFVLIASEFMPVSLLTPIARDLGVTEGLAGRGIAI 61 Query: 73 SGAFAVLTSLSIARLAGQLPRKTLLLWLTALMLISGPVIALAPNYPVYMAGRVLIGIAIG 132 SGA AVLTSL+++ LAG++ RK LLL +T LM +SG +IALA +Y +YM GR +IG+AIG Sbjct: 62 SGALAVLTSLTLSTLAGKMNRKFLLLGMTVLMAVSGLIIALATSYLMYMVGRAMIGVAIG 121 Query: 133 GFWSMSAAAAIRLVPPHEVARALAVFNGGNALATVVAAPLGSYLGALIGWRGAFLCLAPV 192 GFWSMSAA AIRLVP H+V RALA+FN GNALATVVAAPLGSYLGA +GWRGAFLCL P+ Sbjct: 122 GFWSMSAATAIRLVPQHQVTRALAIFNAGNALATVVAAPLGSYLGATVGWRGAFLCLVPM 181 Query: 193 ALLALLWQALSLPAMRPAARHTAPTHPLALLATPLVALGMAGVSLLFMGQFTLFTYLRPF 252 A++A +WQ +SLP+M HT+ L + +V +GM L FMGQF LFTY+RPF Sbjct: 182 AVVAFIWQCISLPSMDANKSHTSCGAVFRLFSRRMVVVGMIACGLFFMGQFALFTYVRPF 241 Query: 253 LESETRVQVQTLSLILLAIGVAGFIGTTLIGRLLRRSFYGTLVFIPLLMAVIAMALVACG 312 LES TRV LSLILL IGVAGFIGT ++ L R Y TL+ IP LMAVIA+ L+ G Sbjct: 242 LESVTRVNSLGLSLILLIIGVAGFIGTLVVSIFLNRKCYPTLMAIPGLMAVIAIGLMLTG 301 Query: 313 HHVLPVSLLLALWGLVATAAPVGWWSWVARTLPHDAEAGGGLMVALVQLAIGLGSTLGGL 372 HHV VSLLL LWG++ATAAP GWW+W+ARTLP +AEAGGGLMVA++QL+I LGST GG+ Sbjct: 302 HHVWMVSLLLGLWGMLATAAPTGWWTWIARTLPDNAEAGGGLMVAVIQLSIALGSTAGGI 361 Query: 373 LFDHGGHHITFFASAGVLLAAALAAALTAREDRG 406 +FD G TF S+ +LL A + +TAR+ G Sbjct: 362 VFDRLGWQSTFAMSSVLLLCAGVLTFVTARQKAG 395 >RSc0207 [G] COG2814 Arabinose efflux permease Rso Ralstonia solanacearum Length = 408 Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust. Identities = 225/356 (63%), Positives = 274/356 (76%) Query: 28 WGGVFAMTLTAFALVASEFMPVSLLTPIAQDLGVSEGLAGQAISVSGAFAVLTSLSIARL 87 WG VFA++L AF LVASEFMPVSLLTPIA L ++EG AGQAISVSGAFA+LTSL I + Sbjct: 21 WGAVFALSLAAFILVASEFMPVSLLTPIAGSLHLTEGQAGQAISVSGAFALLTSLFIPAM 80 Query: 88 AGQLPRKTLLLWLTALMLISGPVIALAPNYPVYMAGRVLIGIAIGGFWSMSAAAAIRLVP 147 A +L RK LLL LT L ++SG V+ LAP+Y ++ GR LIG+AIGGFWSMSAA A+RLVP Sbjct: 81 AARLDRKVLLLLLTLLTVVSGVVVTLAPDYSTFIIGRALIGVAIGGFWSMSAATAMRLVP 140 Query: 148 PHEVARALAVFNGGNALATVVAAPLGSYLGALIGWRGAFLCLAPVALLALLWQALSLPAM 207 H+V ALA+ NGGNALATV+AAPLGS LGA++GWRGAF C+ PVA +AL+WQ ++LPA+ Sbjct: 141 HHDVPHALAIVNGGNALATVLAAPLGSLLGAVVGWRGAFFCIVPVATIALVWQWMTLPAL 200 Query: 208 RPAARHTAPTHPLALLATPLVALGMAGVSLLFMGQFTLFTYLRPFLESETRVQVQTLSLI 267 + + A LL P VALGMA V L FMGQF LFTYLRPFLE+ T + TLS + Sbjct: 201 KADSSPGAAGDVFTLLRRPAVALGMAAVGLFFMGQFMLFTYLRPFLETVTNTRASTLSFV 260 Query: 268 LLAIGVAGFIGTTLIGRLLRRSFYGTLVFIPLLMAVIAMALVACGHHVLPVSLLLALWGL 327 LL IGVAGF+GT +IG L+ Y TL+ IP+LMA IA+AL + G + ++LLA+WGL Sbjct: 261 LLVIGVAGFVGTAVIGTFLKDGLYRTLIVIPVLMAGIALALASFGGSLAASTILLAIWGL 320 Query: 328 VATAAPVGWWSWVARTLPHDAEAGGGLMVALVQLAIGLGSTLGGLLFDHGGHHITF 383 VATAAPVGWW+W+ARTLP DAE GGGLMVA++QLAI LG+ GG +FD GG+ TF Sbjct: 321 VATAAPVGWWTWLARTLPQDAETGGGLMVAIIQLAITLGAAGGGAMFDAGGYRATF 376