BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0054.p (534 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 184 4e-46 PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae... 136 1e-31 RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso ... 105 2e-22 PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 83 1e-15 RSp1503_2 [C] COG2010 Cytochrome c, mono- and diheme variants Rs... 69 2e-11 >PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 439 Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 138/238 (57%), Gaps = 9/238 (3%) Query: 6 CTCXRGVAMNEKGL---DGGHPLYLSG-ALLDGWYAPSLRGDVNTGIGRWSEAEVVQFLK 61 C RG+ M EK L DG YLSG A L+ W A SLRGD TG+G WSEA++V FL+ Sbjct: 191 CHTPRGLGMQEKALAASDGA--AYLSGSAPLENWIAKSLRGDHRTGLGSWSEADLVSFLR 248 Query: 62 TGRNQHAVVFGSMADAFNNSTQFMSDQDLQAIARYLKSLP-GDPKRDGEPWKYDNGTTTA 120 TGR++ + VFG M+D +S Q+M+D DL AIARYLKSLP DP +P YD A Sbjct: 249 TGRSERSAVFGGMSDVVVHSMQYMTDADLTAIARYLKSLPPADPAD--QPHVYDESVAQA 306 Query: 121 LAAQRLDSPAARTYMAKCAACHAVDGRGRAPWIPPLAGAVSSLAKEDASAINVTLNGSVR 180 L A Y+ C ACH DG+G A P LAG + S +++ L G Sbjct: 307 LFHGDDSKTGAALYVDNCGACHRTDGKGYARVFPALAGNPVVTGSDPTSLVHIVLKGGTL 366 Query: 181 VVADGVPDSYRMPPFRSQLSDAEIADVLSFIRSSWGNHGGAVKVDDVKTLRDRTNPAS 238 P S+ MPPF +++D EIADV++FIR+SWGN +V VD+V+ LR T A+ Sbjct: 367 PATHQAPSSFTMPPFGWRMNDQEIADVVNFIRTSWGNQAPSVSVDEVRRLRKDTGAAA 424 >PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 441 Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 118/231 (51%), Gaps = 14/231 (6%) Query: 6 CTCXRGVAMNEKGL-DGGHP--LYLSGALLDGWYAPSLRGDVNTGIGRWSEAEVVQFLKT 62 C RG+A EK + + G YL+G ++ W A SLR W+ + VQ LKT Sbjct: 195 CHTPRGIAFQEKAMSEAGRSGQFYLAGETVEQWQALSLRN-------LWTVEDTVQLLKT 247 Query: 63 GRNQHAVVFGSMADAFNNSTQFMSDQDLQAIARYLKSLPGDPKRDGEPWKYDNGTTTALA 122 G+N+ A V GSM D ++STQ SD DL AIA YLKSLP +D P D+ A Sbjct: 248 GQNRFATVSGSMTDVIHHSTQHFSDDDLLAIASYLKSLPAG--KDDLPMP-DSERPLAAP 304 Query: 123 AQRLDSPAARTYMAKCAACHAVDGRGRAPWIPPLAGAVSSLAKEDASAINVTLNGSVRVV 182 S Y C+ CH DG G PPLAG + + ++ +++TL G Sbjct: 305 VDLYSSRGGLGYAQFCSDCHRKDGSGVPGMFPPLAGNPTVASANPSTLLHITLTGWKTAQ 364 Query: 183 ADGVPDSYRMPPFRSQLSDAEIADVLSFIRSSWGNHGGAVKVDDVKTLRDR 233 Y MP F +QL D EIA++LSF+RSSWGN G ++ VK LR R Sbjct: 365 TATHSRVYTMPGF-AQLEDREIAEILSFVRSSWGNQGSSIDAGQVKKLRQR 414 >RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso Ralstonia solanacearum Length = 429 Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 17/237 (7%) Query: 6 CTCXRGVAMNEKGLDGGHPLYLSGALLDGWYAPSLRGDVNTGIGRWSEAEVVQFLKTGR- 64 C RG AM EK +D YL+G+ L GW A ++ D +GIG W ++VQ+L+TG Sbjct: 196 CHTPRGFAMQEKAMDERGKGYLAGSTLAGWSAYNITSDPVSGIGGWKPEQIVQYLRTGSV 255 Query: 65 ---NQHAVVFGSMADAFNNSTQFMSDQDLQAIARYLKSLPG---DPKRDGEPWKYDNGTT 118 Q A G M +A +S M+++D++AIA YL+++P +R W Sbjct: 256 PGIGQAA---GPMGEAVQHSFSRMTERDVRAIAEYLRTVPAVSTGAQRARHGWGTPATDV 312 Query: 119 TALAAQRLDSP--AARTYMAKCAACHAVDGRGRAP-WIPPLAGAVSSLAKEDASAINVTL 175 AL + +++ AAR Y+ CA CH DGRG + PPL + A++ + + V L Sbjct: 313 IALRGKPIETTIDAARLYLGNCATCHQADGRGTPDGYYPPLLHNSAVGARDTRNLVQVML 372 Query: 176 NGSVRVVADGVPDSYRMPPFRSQLSDAEIADVLSFIRSSWGNHGG-AVKVDDVKTLR 231 +G R D MP F QLSDA++A + +++ +G+ A+ D++ R Sbjct: 373 HGIERRAGD---RHIGMPAFGRQLSDAQLAALANYVTRQFGDPATPALTADEIAKRR 426 >PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 415 Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 16/209 (7%) Query: 27 LSGALLDGWYAPSL-RGDVNTGIGRWSEAEVVQFLKTGRNQHAVVFGSMADAFNNSTQFM 85 LSG LL+G+ APSL GD+ W++ ++ FLK G + +F M ++STQ + Sbjct: 207 LSGGLLNGYLAPSLLPGDL--AARGWTQPDLASFLKHGMSAQGSMFNEMFPVVHHSTQHL 264 Query: 86 SDQDLQAIARYLKSLPGDPKRDGEPWKYDNGTTTALAAQRLDSPAAR---TYMAKCAACH 142 D DL A+A YL P + AL +L+ R Y+ CA CH Sbjct: 265 DDGDLAAMATYLLGDQPPPAK----------VVQALPEAQLNDSGKRGRQQYLNVCAGCH 314 Query: 143 AVDGRGRAPWIPPLAGAVSSLAKEDASAINVTLNGSVRVVADGVPDSYRMPPFRSQLSDA 202 +G G+ + G + ++ + + V +G V G MP F +L D Sbjct: 315 GGEGEGKPHIAVAMNGNTTLRLQDPRNLLRVIEDGIVEQQFTGFERMQPMPGFAGKLDDE 374 Query: 203 EIADVLSFIRSSWGNHGGAVKVDDVKTLR 231 ++ D+L+++R +WG G + V L+ Sbjct: 375 QLTDLLNYLRQTWGGLPGDLGPQQVAQLK 403 >RSp1503_2 [C] COG2010 Cytochrome c, mono- and diheme variants Rso Ralstonia solanacearum Length = 119 Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 7/109 (6%) Query: 134 YMAKCAACHAVDGRGRAPWIPPLAGAVSSLAKEDASAINVTL---NGSVRVVADGVPDSY 190 + C+ CH +G G PPLA + LA + A+++ L NG ++V +G Sbjct: 11 FAGTCSVCHQSNGTGLPGVFPPLAKS-DFLAADPKRAVSIVLHGLNGKIKV--NGQEYDS 67 Query: 191 RMPPFRSQLSDAEIADVLSFIRSSWGNHGGAVKVDDVKTLRDRTNPASS 239 MPP +QL+D E+A++L+++ +SW N GG V +DVKT+R + PA + Sbjct: 68 VMPPM-TQLNDDEVANILTYVLNSWDNPGGRVSAEDVKTIRAQPAPAKA 115