BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0032.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr1523 [S] COG3548 Predicted integral membrane protein Mlo Meso...   167   1e-41
L85237 [S] COG3548 Predicted integral membrane protein Lla Lacto...   114   2e-25
L142704 [S] COG3548 Predicted integral membrane protein Lla Lact...    79   5e-15
MTH1490 [S] COG3548 Predicted integral membrane protein Mth Meth...    68   1e-11
L118350 [S] COG3548 Predicted integral membrane protein Lla Lact...    67   2e-11

>mlr1523 [S] COG3548 Predicted integral membrane protein Mlo Mesorhizobium
           loti
          Length = 246

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 118/188 (62%)

Query: 1   VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 60
           + K R+EAF+DGV+AI ITIMVL L+ P G  ++ L PL P   SYVLSF+ +GIYW N 
Sbjct: 56  MGKGRVEAFTDGVVAIIITIMVLELKVPHGEDVSALLPLWPVFFSYVLSFINVGIYWNNL 115

Query: 61  HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 120
           H++     +VD RVLWANL+LLFWLSL+P  T+++  +H    PVA YG  L +C++++ 
Sbjct: 116 HNMFHTVQRVDGRVLWANLNLLFWLSLMPVTTAFMGENHFAPVPVAVYGADLALCAIAYN 175

Query: 121 LLKRALRHSEAAHPSLAAMLGHGRKNALSILFYAVAIPLSLATPLGATAIYVLLALLWFL 180
           +L  AL        + A  LG+ RK  LS+  Y  A+ L+        A+YVL+A++W +
Sbjct: 176 ILAAALHRLHGNDTAFAKALGNDRKGKLSLAVYIAAVLLTFVNQWIGVALYVLVAMIWLV 235

Query: 181 PDHHFETV 188
           PD  F  V
Sbjct: 236 PDTRFARV 243


>L85237 [S] COG3548 Predicted integral membrane protein Lla Lactococcus
           lactis
          Length = 188

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 1   VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 60
           ++K+RLEAF+D VIAI +T++VL L  P    L     L+P L  Y +SF  + IYWVNH
Sbjct: 1   MSKTRLEAFTDAVIAIIMTVLVLELVRPDSDSLQSFIALLPHLGVYFVSFFILAIYWVNH 60

Query: 61  HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 120
           HHL Q   +++ +VLW N+  LF LSL+P  ++WV+ +     P   Y ++    +  +L
Sbjct: 61  HHLFQSIKRINGKVLWINISFLFVLSLIPIFSNWVSIYPNSFIPELGYVIIFFFGNFIYL 120

Query: 121 LLKRALRHSEAAHPSLAAMLGHGRKNALSILFYAVAIPLS-LATPLGATAIYVLLALLWF 179
           LL R L        +    +   RKN LS++   V+I L     P+       L+  +W 
Sbjct: 121 LLTRELLKINGHRKTSETTI---RKNILSVVLNIVSILLGYFIAPVIMLVGSALIFSMWV 177

Query: 180 LPDHHFE 186
           +PD + E
Sbjct: 178 IPDKNIE 184


>L142704 [S] COG3548 Predicted integral membrane protein Lla Lactococcus
           lactis
          Length = 183

 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 1   VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 60
           + K R  AF+D +IAI  TIMVL  +TP  +G   LA L  PLL+Y LSF  I   W NH
Sbjct: 1   MEKERFLAFTDAIIAIIATIMVLEFKTPDKSGWPALAELTIPLLAYALSFFMIMTVWYNH 60

Query: 61  HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 120
           H L +    +  R+   N   LF +S  PF T WV  H  +  P   Y +V+ + +  F 
Sbjct: 61  HQLYRDIKNITPRIFLLNTLWLFIMSFFPFTTGWVGKHASEFLPEFFYLIVIFLWAAVFH 120

Query: 121 LLKRAL--RHSEAAHPSLAAMLGHGRKNALSILFYAVAI 157
           L+   L   + +  +  L   L  GR N   I F ++ I
Sbjct: 121 LMDHELLKENPDKEYKELTHSLS-GR-NLFLINFLSIVI 157


>MTH1490 [S] COG3548 Predicted integral membrane protein Mth
           Methanothermobacter thermautotrophicus
          Length = 188

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   VNKSRLEAFSDGVIAIAITIMVLGLQTPQG-----AGLADLAPLMPPLLSYVLSFVYIGI 55
           + K RLE   D + AIA+TI+VLG+  P G     A  A +  L   L SY LSF+ +G+
Sbjct: 4   MKKKRLEGLVDAIFAIAMTILVLGIDVPTGTMSVPAMDAYIMGLASDLYSYCLSFLLLGV 63

Query: 56  Y-WVNHHHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAP 104
           + WVNH H  +L  +VD   +W N+  L  + L+PF T    N+     P
Sbjct: 64  FWWVNHMHFEKLE-KVDTGFIWINIVWLMVVVLVPFSTKLTGNYGDLVTP 112


>L118350 [S] COG3548 Predicted integral membrane protein Lla Lactococcus
          lactis
          Length = 203

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1  VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLAD-LAPLMPPLLSYVLSFVYIGIYWVN 59
          V+K RL  F D +IA+ +TIM+L  + P+  G+ D L   +  L++Y+LSF+Y+   W N
Sbjct: 2  VSKGRLAGFIDAIIAVIMTIMLLEFELPKTGGILDFLKDNLVYLIAYLLSFIYVTTSWFN 61

Query: 60 HHHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSW 94
            ++L  A ++ RR+  + +  +  LS+LP +++W
Sbjct: 62 QQYMLSQAEKITRRIYHSCMIWVLSLSMLPVLSAW 96