BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0027.p (289 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2696 [K] COG2207 AraC-type DNA-binding domain-containing prote... 212 6e-55 SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing prot... 204 2e-52 mll0489 [K] COG2207 AraC-type DNA-binding domain-containing prot... 131 2e-30 SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing prot... 121 1e-27 SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing prot... 108 1e-23 >PA2696 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 297 Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 110/260 (42%), Positives = 162/260 (62%), Gaps = 7/260 (2%) Query: 33 SSGAVP----VIDIPGEDAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQW 88 +S A P VI IP D+FSVIVQL+DF H+LW G +LV GGH ++I L ++ Sbjct: 29 NSEATPDPDKVIHIPCADSFSVIVQLRDFNSHRLWNGNKLVFDGGHPRKSISIAYLGDEI 88 Query: 89 RCQHLSDYDNVRLQLPRATIEQWSEEGGRRISGLQQRQ-AVRDPVIWHLVQAMLPMLGEA 147 +CQH + YDNVR LPRA+I+++ E G+R S +R V DPV++HL A+LP A Sbjct: 89 KCQHRTTYDNVRFMLPRASIKEFLYEEGQRASAEPERIIGVDDPVVYHLALALLPSFARA 148 Query: 148 ANDGDTVFMDSVTLALHTHLARHYGGQPLARNSGR-LAGWQQVRVRDYMLAHLGQRLTLA 206 + + +F++ V LAL TH+ + + +G+ LA WQ R ++ + HL + +++A Sbjct: 149 G-ERNELFIEQVMLALLTHVQDRFASTQVPVCTGKGLAPWQLRRAKELIAGHLAEGVSVA 207 Query: 207 ELAAQCGLSRAHFSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQ 266 LA +CGLSR++F++AFK S G+ PH WL R R+ A +L+ + +S I + CGFSDQ Sbjct: 208 RLAEECGLSRSYFTKAFKCSTGVSPHEWLMRMRVDRAKELMLGSDEPLSQIGVACGFSDQ 267 Query: 267 SHFSRVFKQVMGVGPMGWVR 286 HFSR+F ++ G P W R Sbjct: 268 PHFSRIFLRLAGASPSTWRR 287 >SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 103/248 (41%), Positives = 158/248 (63%), Gaps = 6/248 (2%) Query: 42 IPGEDAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDNVRL 101 IP DAF VIVQL+DF H+LWR +LV+ GGH +AITDLR+QW+C HLS +DN+R Sbjct: 44 IPCTDAFGVIVQLRDFDTHRLWRRGELVYEGGHAKASLAITDLRDQWQCHHLSPFDNIRF 103 Query: 102 QLPRATIEQWSEEGGR-RISGLQQRQAVRDPVIWHLVQAMLPMLGEAANDGDTVFMDSVT 160 +P + + ++EE GR L Q DPV+ L QA+LP L + + D + +F++ + Sbjct: 104 HIPFSRMRAFAEEVGRSEYMALACVQGRIDPVMHGLAQALLPSLDDPS-DANPLFLEQIN 162 Query: 161 LALHTHLARHYGGQ--PLARNSGRLAGWQQVRVRDYMLAHLGQRLTLAELAAQCGLSRAH 218 LA+ HL++ YGG P+ + G L+ WQ+ D++ +H + ++ +LA++CGLSR++ Sbjct: 163 LAMLAHLSQTYGGLHFPVDKK-GTLSPWQERLATDFLASHFNKPFSIGDLASRCGLSRSY 221 Query: 219 FSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFKQVMG 278 F++AFK SFG P WL R+A ++L D S++ +++ CGF+DQSH +RVF + G Sbjct: 222 FNKAFKESFGRTPSKWLTEYRVARVKEMLLLD-LSIAEVSINCGFADQSHMTRVFTSLTG 280 Query: 279 VGPMGWVR 286 P + R Sbjct: 281 DTPARFRR 288 >mll0489 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 313 Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 6/249 (2%) Query: 46 DAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDNVRLQLPR 105 DAF V QLQD+ +H W + G R+G + DL+ + + + V +PR Sbjct: 65 DAFLVQTQLQDYPNHISWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHFYIPR 124 Query: 106 ATIEQWSEE-GGRRISGLQQ--RQAVRDPVIWHLVQAMLPMLGEAANDGDTVFMDSVTLA 162 AT +E+ R IS L Q + D VI L+ + + +A + + +F+D + +A Sbjct: 125 ATFNTVAEDLEARSISELAYVPAQPIDDDVIRGLIGTVRAAI-KAPEETNRLFLDHLMMA 183 Query: 163 LHTHLARHYGG-QPLA-RNSGRLAGWQQVRVRDYMLAHLGQRLTLAELAAQCGLSRAHFS 220 HLA+ YGG +P + ++ G LA WQ + + L +L L ++AA C LS ++FS Sbjct: 184 AAVHLAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVSYFS 243 Query: 221 RAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFKQVMGVG 280 +AF + GL PH WL +R+ A + + +++ +AL CGFSDQSHF+RVF +++G Sbjct: 244 KAFCKTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLVGTS 303 Query: 281 PMGWVRGQG 289 P W R + Sbjct: 304 PATWRRARN 312 >SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 364 Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 5/201 (2%) Query: 90 CQHLS-DYDNVRLQLPRATIEQWSEEGG-RRISGLQQRQAVRDPVIWHLVQAMLPMLGEA 147 C LS +D + L++ +E+ ++ R +S L+ A DPV+ ++ A+ + + Sbjct: 159 CADLSGSFDFMLLEINHNALERIADAADLRSVSELRPVAAHADPVLGGMLGALFATVDGS 218 Query: 148 ANDGDTVFMDSVTLALHTHLARHYGGQ--PLARNSGRLAGWQQVRVRDYMLAHLGQRLTL 205 A D +F+D +++A+ H+ + YG +A + RL+ Q R++D + + L LT+ Sbjct: 219 A-DRSALFVDQLSIAIGVHVVQQYGNGRGNVAASGRRLSSRCQARIKDLVQSQLNGELTV 277 Query: 206 AELAAQCGLSRAHFSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSD 265 +LA+ C LS+A F RAF+ + G PH WLQ+QRI A LL+ +S IA CGFSD Sbjct: 278 EQLASACNLSQATFLRAFRETMGKTPHRWLQQQRIEKAVDLLQFSQTQLSEIASVCGFSD 337 Query: 266 QSHFSRVFKQVMGVGPMGWVR 286 QSHF+R F Q MG P W R Sbjct: 338 QSHFTRAFVQAMGATPGAWRR 358 >SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 6/250 (2%) Query: 39 VIDIPGEDAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDN 98 ++ +P + A+ +++ L+D H + R G + + DL + SD D+ Sbjct: 49 LVSLPPDSAYFLMLYLKDAYHCDVAPDGTESETLRFRQGSVCLVDLAHGACIRLFSDLDS 108 Query: 99 VRLQLPRATIEQWSE-EGGRRISGLQQRQAVRDPVIWHLVQAMLPMLGEAANDGDTVFMD 157 + QLPR I + SE R + L+ R+ D V+ +L A+LP+ E + T + Sbjct: 109 LAFQLPRELIREVSEFSAAPRATTLRCRRGEDDDVLRNLGAALLPLF-ERQGNFHTAVLQ 167 Query: 158 SVTLALHTHLARHYG---GQPLARNSGRLAGWQQVRVRDYMLAHLGQRLTLAELAAQCGL 214 + +A+ HL YG GQ R++ + WQ+ +++M+ H + +A A+ G+ Sbjct: 168 HIAIAICAHLLHAYGDHGGQGGPRST-QFTVWQERAAKNFMIDHFADQFPMAAAASAAGV 226 Query: 215 SRAHFSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFK 274 S F +FK G P WL R A A Q L E +++ IA CGF+D+ HF++VF+ Sbjct: 227 SIRRFIESFKRVTGQTPKQWLLGYRTARAKQYLGERSLTLAEIATGCGFTDEDHFTKVFR 286 Query: 275 QVMGVGPMGW 284 +V G P W Sbjct: 287 RVAGTTPAAW 296