BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0026.p         (226 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl212 [P] COG0783 DNA-binding ferritin-like protein (oxidative ...   186   3e-47
CC2873 [P] COG0783 DNA-binding ferritin-like protein (oxidative ...    86   7e-17
RSc2687 [P] COG0783 DNA-binding ferritin-like protein (oxidative...    70   3e-12
slr1894 [P] COG0783 DNA-binding ferritin-like protein (oxidative...    70   3e-12
all4145 [P] COG0783 DNA-binding ferritin-like protein (oxidative...    67   2e-11

>AGl212 [P] COG0783 DNA-binding ferritin-like protein (oxidative damage
           protectant) Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 212

 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 103/138 (74%)

Query: 13  KRRLAPLATPGVLSAQASQEIGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLDD 72
           K R  PLATP  L+ +AS+EI  ALT LLAD+F LY+KTKNFHWH+SGPHFRDYH LLD+
Sbjct: 48  KNRKLPLATPTDLATEASREISAALTALLADVFTLYIKTKNFHWHVSGPHFRDYHTLLDE 107

Query: 73  QSQQILAITDAVAERVRKIGATTLRSTGQVGKLQRLADNDADFVTPSDMLAELREDNLRL 132
           Q  QI A+TD +AER RKIG TT+RS   + +++RL DNDADFVTP DMLAELREDN +L
Sbjct: 108 QGAQIFAMTDDIAERARKIGGTTIRSISHIARVKRLLDNDADFVTPEDMLAELREDNKQL 167

Query: 133 VGFMMATHELCDEHGDVA 150
              +  TH L  +  D A
Sbjct: 168 TAILRQTHNLTSDLNDHA 185


>CC2873 [P] COG0783 DNA-binding ferritin-like protein (oxidative damage
           protectant) Ccr Caulobacter vibrioides
          Length = 178

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 1/126 (0%)

Query: 25  LSAQASQEIGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQQILAITDAV 84
           L+A+   +I  +L  +LAD +ALYLKT  +HW++ GP+F+  H+LL+ Q Q+  A  DA+
Sbjct: 28  LTAKQRTDIAASLNKVLADSYALYLKTHGYHWNVRGPNFQSLHVLLEGQYQEEWAALDAI 87

Query: 85  AERVRKIGATTLRSTGQVGKLQRLADNDADFVTPSDMLAELREDNLRLVGFMMATHELCD 144
           AER+R +G    +     G L  L D D +      M+ EL+ DN  ++  +     + D
Sbjct: 88  AERIRALGELAPQGYAAFGNLSSLKDGDPE-QDWEGMIGELKADNETVIRTLRDAMPIAD 146

Query: 145 EHGDVA 150
           E GD A
Sbjct: 147 EAGDEA 152


>RSc2687 [P] COG0783 DNA-binding ferritin-like protein (oxidative damage
           protectant) Rso Ralstonia solanacearum
          Length = 166

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 31  QEIGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQQILAITDAVAERVRK 90
           ++I   L+ LLAD ++LYLKT NFHW+++GP F   HL+ + Q  ++    D+VAER+R 
Sbjct: 24  KKIAEGLSRLLADTYSLYLKTHNFHWNVTGPMFNTLHLMFETQYNELWTAVDSVAERIRA 83

Query: 91  IGATTLRSTGQVGKLQRLADNDADFVTPSDMLAEL 125
           +G     S  +  +L  + +         DM+ EL
Sbjct: 84  LGYPAPGSYSEFARLSSIPEAKG-VPAAEDMIREL 117


>slr1894 [P] COG0783 DNA-binding ferritin-like protein (oxidative damage
           protectant) Syn Synechocystis
          Length = 156

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 49/81 (60%)

Query: 32  EIGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQQILAITDAVAERVRKI 91
           +I  +L  LLAD + LYL+T NFHW+++GP FRD HL+ ++Q  ++    D +AER+R +
Sbjct: 15  KIAESLKKLLADTYTLYLQTHNFHWNVTGPQFRDLHLMFEEQYNELALAVDDIAERIRSL 74

Query: 92  GATTLRSTGQVGKLQRLADND 112
                 +  +  KL  + + D
Sbjct: 75  DVFAPGTYKEFAKLSSVQEVD 95


>all4145 [P] COG0783 DNA-binding ferritin-like protein (oxidative damage
           protectant) Nos Nostoc sp. PCC 7120
          Length = 163

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query: 32  EIGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQQILAITDAVAERVRKI 91
           +I   L+ LLAD + LYLKT NFHW+++GP F+  HL+ + Q  ++    D VAER+R +
Sbjct: 21  KIAEGLSRLLADTYTLYLKTHNFHWNVTGPMFQTLHLMFETQYTELALAVDLVAERIRAL 80

Query: 92  GATTLRSTGQVGKLQRLAD 110
           G     +  +  KL  + +
Sbjct: 81  GYPAPGTYSEYAKLSSIPE 99