BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0024.p         (120 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0240 [S] COG2259 Predicted membrane protein Rso Ralstonia sol...   132   3e-31

>RSc0240 [S] COG2259 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 145

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 90/117 (76%)

Query: 1   LLFLRVAGSFMLFYVHGLPKLMHYAHELTVIEDPFGLGPTVSLWSAILAEALCPVLIALG 60
           LLFLRVAGS +L YVHGLPK++HY+ EL  IEDPF LG   +L  AIL+E +CP+LIALG
Sbjct: 29  LLFLRVAGSALLLYVHGLPKVLHYSQELARIEDPFRLGAAPTLLLAILSETVCPLLIALG 88

Query: 61  LFTRLACLPIIGVLLVAMLAVHPGWSIAEGQFGWLLLVIFTAIALCGPGQWRLGQAA 117
           +  RLACLPI+ +LLVA+L VH  WSIA+ QFGWLLL++F  + + GPG++ L   A
Sbjct: 89  MLARLACLPIVFLLLVALLVVHREWSIADAQFGWLLLILFVTVLIAGPGRFSLSPKA 145