BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0016.p (300 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing prot... 214 1e-55 PA2696 [K] COG2207 AraC-type DNA-binding domain-containing prote... 146 6e-35 mll0489 [K] COG2207 AraC-type DNA-binding domain-containing prot... 143 5e-34 SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing prot... 135 9e-32 SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing prot... 120 3e-27 >SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 364 Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 169/289 (58%), Gaps = 1/289 (0%) Query: 10 APARSDSLGCSSTALKQSQELQGSQFSFYRKRVEGREVSQVYTPASDRGFLVGISMASQH 69 A R DSLGCS L + ++G SF+RKR +V TPA+ RG+L+G+S A H Sbjct: 70 ATKRHDSLGCSMDRLDDDRTIEGRDMSFHRKRSASAPPGRVTTPATGRGYLLGLSAAGGH 129 Query: 70 RRSIFRGRQGAQFEFGRGAVYIRDFSEDYRADLQTPFDFLLVELPLSWFATVNEDLRGRK 129 R I + +F + AVY+R+F++DY ADL FDF+L+E+ + + + R Sbjct: 130 SRRIIKEHHSTVHDFEQNAVYLRNFADDYCADLSGSFDFMLLEINHNALERIADAADLRS 189 Query: 130 ASGLATITGHDDPVLAHLAAALAPALAQPDADNHLFVDQLGLAMGTHLLQRYG-GASLSA 188 S L + H DPVL + AL + + LFVDQL +A+G H++Q+YG G A Sbjct: 190 VSELRPVAAHADPVLGGMLGALFATVDGSADRSALFVDQLSIAIGVHVVQQYGNGRGNVA 249 Query: 189 PRHVRLSRLHEERAKQMLLQKNRDQVSIPEIARECNMSASYFLRAFKASTGHTPHQWLLL 248 RLS + R K ++ + ++++ ++A CN+S + FLRAF+ + G TPH+WL Sbjct: 250 ASGRRLSSRCQARIKDLVQSQLNGELTVEQLASACNLSQATFLRAFRETMGKTPHRWLQQ 309 Query: 249 QRVDMAREYLRHSGLSLAEIAVACDFYDQSHFSRVFSQIVGSSPGAWRR 297 QR++ A + L+ S L+EIA C F DQSHF+R F Q +G++PGAWRR Sbjct: 310 QRIEKAVDLLQFSQTQLSEIASVCGFSDQSHFTRAFVQAMGATPGAWRR 358 >PA2696 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 297 Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/253 (35%), Positives = 141/253 (55%), Gaps = 10/253 (3%) Query: 50 VYTPASDRGFLVGISMASQHRRSIFRGRQGAQFEFG--RGAVYIRDFSEDYRADLQTPFD 107 ++ P +D F V + + + ++ G + F+ G R ++ I ++ + +T +D Sbjct: 40 IHIPCAD-SFSVIVQLRDFNSHRLWNGNK-LVFDGGHPRKSISIAYLGDEIKCQHRTTYD 97 Query: 108 FLLVELPLSWFATVNEDL--RGRKASGLAT-ITGHDDPVLAHLAAALAPALAQPDADNHL 164 + LP A++ E L G++AS I G DDPV+ HLA AL P+ A+ N L Sbjct: 98 NVRFMLPR---ASIKEFLYEEGQRASAEPERIIGVDDPVVYHLALALLPSFARAGERNEL 154 Query: 165 FVDQLGLAMGTHLLQRYGGASLSAPRHVRLSRLHEERAKQMLLQKNRDQVSIPEIARECN 224 F++Q+ LA+ TH+ R+ + L+ RAK+++ + VS+ +A EC Sbjct: 155 FIEQVMLALLTHVQDRFASTQVPVCTGKGLAPWQLRRAKELIAGHLAEGVSVARLAEECG 214 Query: 225 MSASYFLRAFKASTGHTPHQWLLLQRVDMAREYLRHSGLSLAEIAVACDFYDQSHFSRVF 284 +S SYF +AFK STG +PH+WL+ RVD A+E + S L++I VAC F DQ HFSR+F Sbjct: 215 LSRSYFTKAFKCSTGVSPHEWLMRMRVDRAKELMLGSDEPLSQIGVACGFSDQPHFSRIF 274 Query: 285 SQIVGSSPGAWRR 297 ++ G+SP WRR Sbjct: 275 LRLAGASPSTWRR 287 >mll0489 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 313 Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 76 GRQGAQFEFGRGAVYIRDFSEDYRADLQTPFDFLLVELPLSWFATVNEDLRGRKASGLAT 135 GR G G +RD A + P + +P + F TV EDL R S LA Sbjct: 85 GRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHFYIPRATFNTVAEDLEARSISELAY 144 Query: 136 ITGH--DDPVLAHLAAALAPALAQPDADNHLFVDQLGLAMGTHLLQRYGGASLSAPRHVR 193 + DD V+ L + A+ P+ N LF+D L +A HL Q YGG PR ++ Sbjct: 145 VPAQPIDDDVIRGLIGTVRAAIKAPEETNRLFLDHLMMAAAVHLAQTYGGLK---PRSLQ 201 Query: 194 ----LSRLHEERAKQMLLQKNRDQVSIPEIARECNMSASYFLRAFKASTGHTPHQWLLLQ 249 L+ A ++L Q+ + ++A C +S SYF +AF +TG PHQWLL + Sbjct: 202 HRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVSYFSKAFCKTTGLAPHQWLLYR 261 Query: 250 RVDMAREYLRHSGLSLAEIAVACDFYDQSHFSRVFSQIVGSSPGAWRR 297 RV+ A+ + + +LAE+A++C F DQSHF+RVF ++VG+SP WRR Sbjct: 262 RVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLVGTSPATWRR 309 >SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 112/214 (52%), Gaps = 1/214 (0%) Query: 85 GRGAVYIRDFSEDYRADLQTPFDFLLVELPLSWFATVNEDLRGRKASGLATITGHDDPVL 144 + ++ I D + ++ +PFD + +P S E++ + LA + G DPV+ Sbjct: 77 AKASLAITDLRDQWQCHHLSPFDNIRFHIPFSRMRAFAEEVGRSEYMALACVQGRIDPVM 136 Query: 145 AHLAAALAPALAQPDADNHLFVDQLGLAMGTHLLQRYGGASLSAPRHVRLSRLHEERAKQ 204 LA AL P+L P N LF++Q+ LAM HL Q YGG + LS E A Sbjct: 137 HGLAQALLPSLDDPSDANPLFLEQINLAMLAHLSQTYGGLHFPVDKKGTLSPWQERLATD 196 Query: 205 MLLQKNRDQVSIPEIARECNMSASYFLRAFKASTGHTPHQWLLLQRVDMAREYLRHSGLS 264 L SI ++A C +S SYF +AFK S G TP +WL RV +E L LS Sbjct: 197 FLASHFNKPFSIGDLASRCGLSRSYFNKAFKESFGRTPSKWLTEYRVARVKEMLLLD-LS 255 Query: 265 LAEIAVACDFYDQSHFSRVFSQIVGSSPGAWRRR 298 +AE+++ C F DQSH +RVF+ + G +P +RR+ Sbjct: 256 IAEVSINCGFADQSHMTRVFTSLTGDTPARFRRK 289 >SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 118/259 (45%), Gaps = 1/259 (0%) Query: 41 RVEGREVSQVYTPASDRGFLVGISMASQHRRSIFRGRQGAQFEFGRGAVYIRDFSEDYRA 100 R+ G V P FL+ + H G + F +G+V + D + Sbjct: 41 RLNGEANRLVSLPPDSAYFLMLYLKDAYHCDVAPDGTESETLRFRQGSVCLVDLAHGACI 100 Query: 101 DLQTPFDFLLVELPLSWFATVNEDLRGRKASGLATITGHDDPVLAHLAAALAPALAQPDA 160 L + D L +LP V+E +A+ L G DD VL +L AAL P + Sbjct: 101 RLFSDLDSLAFQLPRELIREVSEFSAAPRATTLRCRRGEDDDVLRNLGAALLPLFERQGN 160 Query: 161 DNHLFVDQLGLAMGTHLLQRYGG-ASLSAPRHVRLSRLHEERAKQMLLQKNRDQVSIPEI 219 + + + +A+ HLL YG PR + + E AK ++ DQ + Sbjct: 161 FHTAVLQHIAIAICAHLLHAYGDHGGQGGPRSTQFTVWQERAAKNFMIDHFADQFPMAAA 220 Query: 220 ARECNMSASYFLRAFKASTGHTPHQWLLLQRVDMAREYLRHSGLSLAEIAVACDFYDQSH 279 A +S F+ +FK TG TP QWLL R A++YL L+LAEIA C F D+ H Sbjct: 221 ASAAGVSIRRFIESFKRVTGQTPKQWLLGYRTARAKQYLGERSLTLAEIATGCGFTDEDH 280 Query: 280 FSRVFSQIVGSSPGAWRRR 298 F++VF ++ G++P AWR R Sbjct: 281 FTKVFRRVAGTTPAAWRAR 299