BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0013.p         (92 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2757 [S] COG4125 Predicted membrane protein Pae Pseudomonas ae...   108   3e-24
RSp1513 [S] COG4125 Predicted membrane protein Rso Ralstonia sol...    84   8e-17
PA2880 [S] COG4125 Predicted membrane protein Pae Pseudomonas ae...    67   9e-12
AGc3030 [S] COG4125 Predicted membrane protein Atu Agrobacterium...    67   1e-11
SMa1780 Non COG                                                        64   7e-11

>PA2757 [S] COG4125 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 147

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 62/83 (74%)

Query: 1   LFERWEARQPRRGRNFARRAAHALGFEGGLVVMLVPLFAWWLGISLWEALVLDFGLIVFF 60
           LFE WE RQ  RGR+ ARR AHA+GF+  LVV L+PL AWW+GISL EA  LD  LIV  
Sbjct: 58  LFEFWERRQAVRGRSIARRVAHAIGFQLTLVVYLIPLIAWWMGISLLEAFWLDLALIVLI 117

Query: 61  MIYTYLFNLGFDRVFGLPSSAMP 83
             YT+LFN  FDR+FGLP+SA+P
Sbjct: 118 PCYTFLFNWAFDRLFGLPTSALP 140


>RSp1513 [S] COG4125 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 145

 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 1   LFERWEARQPRRGRNFARRAAHALGFEGGLVVMLVPLFAWWLGISLWEALVLDFGLIVFF 60
           +FER E R   R R  A RAAHA+ FEGGLVV+LVPL A WLG+SL EAL+LD GL++FF
Sbjct: 63  VFERIERRCGWR-RTLAVRAAHAVAFEGGLVVLLVPLGAAWLGVSLLEALMLDIGLMLFF 121

Query: 61  MIYTYLFNLGFD 72
           + YT+ FNL +D
Sbjct: 122 LPYTFCFNLAYD 133


>PA2880 [S] COG4125 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 171

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 1   LFERWEARQPRRGRNFARRAAHALGFEGGLVVMLVPLFAWWLGISLWEALVLDFGLIVFF 60
           LF+R + R   + R    R  HA+ FE GL+V+LVPL AWWL I L EA +LD GLI+FF
Sbjct: 81  LFDRAQRRMGFQ-RTLQVRVLHAMLFELGLIVVLVPLAAWWLSIGLVEAFLLDMGLILFF 139

Query: 61  MIYTYLFNLGFD 72
           + YT  FN  +D
Sbjct: 140 LPYTMAFNWSYD 151


>AGc3030 [S] COG4125 Predicted membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 145

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 6   EARQPRRGRNF---ARRAAHALGFEGGLVVMLVPLFAWWLGISLWEALVLDFGLIVFFMI 62
            A Q  +G      A R AHA+ FE GL+++L+P  AW+L ISL  ALV+D    +F+++
Sbjct: 61  HAMQRLKGTTLKTPAIRVAHAVLFELGLLIVLMPFIAWYLNISLVHALVMDISFALFYVV 120

Query: 63  YTYLFNLGFDRVFGLPS 79
           Y ++FN  +DR+F LP 
Sbjct: 121 YAFVFNWSYDRIFPLPE 137


>SMa1780 Non COG
          Length = 147

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 45/67 (67%)

Query: 13  GRNFARRAAHALGFEGGLVVMLVPLFAWWLGISLWEALVLDFGLIVFFMIYTYLFNLGFD 72
            + F  R  H + FE GL+ +L+P  AW+L + L+E L LD  ++ F+++Y ++FN+ +D
Sbjct: 73  NKTFKMRLVHTVLFEIGLLAILLPPIAWYLNMGLFETLQLDLAIVAFYLVYNFVFNVAYD 132

Query: 73  RVFGLPS 79
           RVF +P+
Sbjct: 133 RVFPVPA 139