BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0003.p (312 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM2786 [S] COG3181 Uncharacterized protein conserved in bacteri... 343 4e-94 PA0754 [S] COG3181 Uncharacterized protein conserved in bacteria... 287 2e-77 SMb20724 Non COG 111 2e-24 AGc4482 [S] COG3181 Uncharacterized protein conserved in bacteri... 108 2e-23 Cgl2764 [S] COG3181 Uncharacterized protein conserved in bacteri... 98 2e-20 >STM2786 [S] COG3181 Uncharacterized protein conserved in bacteria Sty Salmonella typhimurium LT2 Length = 325 Score = 343 bits (879), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 161/313 (51%), Positives = 222/313 (70%), Gaps = 3/313 (0%) Query: 1 LLAACLLACAMPCALAAECIVPAKPGGGMDASCKLLRQAMQEEGG-KQDFKVAYLPGGIG 59 L++ +LA P ECI PAKPGGG D +CKL++ ++ E G ++ +V Y+PGG+G Sbjct: 15 LMSTSVLAQEAPSR--TECIAPAKPGGGFDLTCKLIQVSLLETGAIEKPMRVTYMPGGVG 72 Query: 60 AVAWSSVVSQRRGGPETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVRSD 119 AVA++++V+QR G P T+VAFSGGSLL+L+QGK+G V DVRW+A +G D+GMIAVR+D Sbjct: 73 AVAYNAIVAQRPGEPGTVVAFSGGSLLNLSQGKFGRYGVDDVRWLASVGTDYGMIAVRAD 132 Query: 120 APWRNLKQLLEAIRKDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGGD 179 +PW+ LK L+ A+ KDP++V +G ++GSQDW+K ALLAQ+A P + R+VA EGGG+ Sbjct: 133 SPWKTLKDLMTAMEKDPNSVVIGAGASIGSQDWMKSALLAQKANVDPHKMRYVAFEGGGE 192 Query: 180 SFAALQAGHVQVISGDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVVWP 239 AL HVQV+SGD SE ++ K+R+LAV SE RLPG L IPTA+EQGY++VWP Sbjct: 193 PVTALMGNHVQVVSGDLSEMVPYLGGDKIRVLAVFSENRLPGQLANIPTAKEQGYDLVWP 252 Query: 240 IIRGFYMSPHAPEADYRRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQTVA 299 IIRGFY+ P +ADY+ WV F ++ EF +QR + GL F MTG+ L DY+ + V Sbjct: 253 IIRGFYVGPKVSDADYQWWVDTFKKLQQTDEFKKQRDLRGLFEFDMTGQQLDDYVKKQVT 312 Query: 300 RYRRQSQELGLVR 312 YR Q++ GL + Sbjct: 313 DYREQAKAFGLAK 325 >PA0754 [S] COG3181 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 327 Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 146/297 (49%), Positives = 207/297 (69%), Gaps = 2/297 (0%) Query: 18 ECIVPAKPGGGMDASCKLLRQAMQEEGG-KQDFKVAYLPGGIGAVAWSSVVSQRRGGPET 76 ECI PA PGGG D +CKL + A+ E + +V Y+PGG+GAVA+++VV+QR G T Sbjct: 31 ECIAPASPGGGFDLTCKLAQSALVEAKLLSKPMRVTYMPGGVGAVAYNAVVAQRPGDAGT 90 Query: 77 LVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEAIRKDP 136 + AFS GSLL+LAQGK+G D V+W+A IG +G IAVR+D+P++NL L++A++ DP Sbjct: 91 ITAFSSGSLLNLAQGKFGRFDENAVKWLAAIGTSYGAIAVRTDSPYKNLDDLVKALKADP 150 Query: 137 SAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGGDSFAALQAGHVQVISGDT 196 S V +G GTVGSQDW++ AL+A+ AG PR R+VALEGGG+ AL GH+QV S D Sbjct: 151 SKVVIGSGGTVGSQDWMQTALIAKAAGINPRDLRYVALEGGGEIATALLGGHIQVGSTDI 210 Query: 197 SEAAYFMADGKVRILAVLSEQRLP-GPLQAIPTAREQGYEVVWPIIRGFYMSPHAPEADY 255 S++ + G +R+LAV SE+RLP + IPTA+EQGY++VWP++RGFY+ P + DY Sbjct: 211 SDSMPHILSGDMRLLAVFSEERLPEAAMANIPTAKEQGYDIVWPVVRGFYLGPKVSDEDY 270 Query: 256 RRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQTVARYRRQSQELGLVR 312 W FD++LA +F + R L PFAMTG+ L Y+ Q V +Y++ +++ GL++ Sbjct: 271 AWWKNAFDQLLASEDFAKLRDQRELFPFAMTGEELDGYVKQQVQQYKQLAKDFGLIQ 327 >SMb20724 Non COG Length = 314 Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 6/314 (1%) Query: 1 LLAACLL-ACAMPCALAAECIV-PAKPGGGMDASCKLLRQAMQEEGGKQDFKVAYLPGGI 58 LA+ L A A+P A I+ PA PGGG D + + L+ MQ+EG + +V +PG Sbjct: 5 FLASILAGAIALPAYAADYTIIAPANPGGGWDQTARSLQTVMQQEGISGNVQVQNVPGAG 64 Query: 59 GAVAWSSVVSQRRGGPETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVRS 118 G + + SQ++G P L+ G ++ P + DV +A + ++ I V + Sbjct: 65 GTIGLAQFASQQKGNPNALL-VGGYVMVGAILTNNSPVTLKDVTPIARLTGEYEAIVVPA 123 Query: 119 DAPWRNLKQLLEAIRKDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGG 178 + + +K L+EA++KDP AV+ G+ G D + + L+A+ AG P + ++A GGG Sbjct: 124 ASEIQTMKDLVEALKKDPGAVSWA-GGSAGGTDHIAVGLIAKAAGVDPTKINYIAYSGGG 182 Query: 179 DSFAALQAGHVQVISGDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVVW 238 ++ AA+ V E + G +R+LAV S +RL G + A PT +E G +VV Sbjct: 183 EALAAILGNQVTAGISGYGEFESQVKAGTLRLLAVSSAERLEG-IDA-PTLKESGVDVVV 240 Query: 239 PIIRGFYMSPHAPEADYRRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQTV 298 R +P E +++ + G Q + G + +A+ + Sbjct: 241 ENWRMVAAAPGLTEEQKAAVSADIEKLAKSAGWQEVLKTKGWQDTYLAGAAFDEQLAKDI 300 Query: 299 ARYRRQSQELGLVR 312 + +++GLV+ Sbjct: 301 SATETVLKDIGLVK 314 >AGc4482 [S] COG3181 Uncharacterized protein conserved in bacteria Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 314 Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 24/286 (8%) Query: 9 CAMPCALAAECIV-PAKPGGGMDASCKLLRQAMQEEGGKQDFKVAYLPGGIGAVAWSSVV 67 A+P A I+ PA PGGG D + + L+ +QEEG + +V +PG G + + Sbjct: 14 IALPAVAADYTIIAPANPGGGWDQTARSLQTVLQEEGISKSVQVQNVPGAGGTIGLAQFA 73 Query: 68 SQRRGGPETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQ 127 SQ++G P L+ G ++ P + +V +A + ++ I V + +P + + Sbjct: 74 SQQKGNPNALI-VGGYVMVGAILTNNAPVTLKEVTPIARLTGEYEAIVVPASSPLKTIGD 132 Query: 128 LLEAIRKDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGGDSFAALQAG 187 L++ ++KDP +V+ G G+ G D + + L+A+ AG P + ++A GGG++ A++ Sbjct: 133 LVDQLKKDPGSVSWG-GGSAGGTDHIAVGLIAKAAGVDPTKINYIAYSGGGEALASILGS 191 Query: 188 HVQVISGDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVVWPIIRGFYMS 247 V E + G +R+LAV SE++L G PT +E G +VV R Sbjct: 192 QVTAGISSYGEFESQVKAGTLRLLAVSSEEKLDG--VDAPTLKESGLDVVVQNWRMVAAP 249 Query: 248 P-------HAPEADYRRWVR------------YFDRVLADPEFDRQ 274 P A AD + V+ + D LA EF Q Sbjct: 250 PGLTPEQEKAVNADIEKLVKSAKWQETLKTKSWMDTYLAGDEFKAQ 295 >Cgl2764 [S] COG3181 Uncharacterized protein conserved in bacteria Cgl Corynebacterium glutamicum Length = 334 Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 19 CIVPAKPGGGMDASCKLLRQAMQEEGGKQDFKVAYLPGGIGAVAWSSVVSQRRGGPETLV 78 I PA GGG D + +Q+M+ + +V +PG G +A + + P TL+ Sbjct: 52 LIAPAAAGGGWDTFQREQQQSMRVNKIVNNIQVVNIPGAGGTIALGKLSTMT--APNTLM 109 Query: 79 AFSGGSLLSLAQGKYG-PADVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEAIRKDPS 137 GG+ AQ ++ PA + DV +A + + +I V +D+P+ L++L+E + DP+ Sbjct: 110 V--GGTGHIAAQIQFDTPAKIQDVTPIARVVEEFDIITVPADSPYNTLEELIEGWKADPA 167 Query: 138 AVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGGDSFAALQAGHVQVISGDTS 197 V+ +G GS D L M +A AG P+Q F+ +GGG++ AL G + +G + Sbjct: 168 GVS--WTGG-GSFDQLVMTEIALSAGIDPKQTTFIPSDGGGEAIQALLNGTAKASTGGFA 224 Query: 198 EAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVVWPIIRGFYMSP 248 + + G++++L + +E+RLPG IPT EQGY+V R + P Sbjct: 225 DMYPQVEAGRLKVLGIAAEERLPG--SDIPTLVEQGYDVTLTNWRAMFAPP 273