BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0043.p         (120 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2520 [P] COG3696 Putative silver efflux pump Pae Pseudomonas a...   191   5e-49
RSp0493 [P] COG3696 Putative silver efflux pump Rso Ralstonia so...   179   1e-45
CC2390 Non COG                                                        135   2e-32
CC2724 Non COG                                                        130   8e-31
RSp1040 [P] COG3696 Putative silver efflux pump Rso Ralstonia so...    96   3e-20

>PA2520 [P] COG3696 Putative silver efflux pump Pae Pseudomonas aeruginosa
          Length = 1051

 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 108/112 (96%)

Query: 1   MLIGENSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVV 60
           MLIGENSR+V+QAV ++++EINRTLP+GV+A+TVYDRT LVDKA+ATVKKNLVEGA LV+
Sbjct: 296 MLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAVATVKKNLVEGAALVI 355

Query: 61  AVLFLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
           AVLFLFLGNIRAA+ITAT+IPL+MLFTFTGMV N+VSANL+SLGALDFGII+
Sbjct: 356 AVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGALDFGIIV 407


>RSp0493 [P] COG3696 Putative silver efflux pump Rso Ralstonia solanacearum
          Length = 1064

 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 103/112 (91%)

Query: 1   MLIGENSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVV 60
           +L+GENSR V+QAVDK+M+EI RTLP GV   TVYDRTVLVDKAIATVKKNL+EGA+LV+
Sbjct: 296 LLMGENSRTVAQAVDKRMREIRRTLPAGVRVETVYDRTVLVDKAIATVKKNLLEGAILVM 355

Query: 61  AVLFLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
           AVLFLFLGN+RAA++TA VIPL+ML TF+GMVS KVSANL+SLGALDFGII+
Sbjct: 356 AVLFLFLGNLRAAVLTALVIPLSMLMTFSGMVSAKVSANLMSLGALDFGIIV 407


>CC2390 Non COG
          Length = 1057

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 92/112 (82%)

Query: 1   MLIGENSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVV 60
           ML+GENSR V++A   +++E  + LP GV A  +YDRT LVD+AIATV+KNLVEGA+LV+
Sbjct: 310 MLVGENSRTVARATAARLEEAAKALPAGVTAEPIYDRTNLVDRAIATVEKNLVEGAILVI 369

Query: 61  AVLFLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
            VLFL LGNIRAA+ITA VIPL+M  T TGMV +KVS NL+SLGALDFG+I+
Sbjct: 370 VVLFLLLGNIRAALITAAVIPLSMFLTITGMVQSKVSGNLMSLGALDFGLIV 421


>CC2724 Non COG
          Length = 1080

 Score =  130 bits (327), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 84/112 (75%)

Query: 1   MLIGENSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVV 60
           ML GENSR V+ A  ++++ I +TLP GV     YDR+ LV+  I TV+KNLVEGALLV+
Sbjct: 320 MLTGENSRAVAGASAERLKAIAKTLPPGVRVQITYDRSKLVNATIKTVEKNLVEGALLVI 379

Query: 61  AVLFLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
           AVLF+ LGN RAA+ITA VIPL+ML T  GM    VS NL+SLGALDFG+I+
Sbjct: 380 AVLFVLLGNFRAALITALVIPLSMLMTAIGMNRLGVSGNLMSLGALDFGLIV 431


>RSp1040 [P] COG3696 Putative silver efflux pump Rso Ralstonia solanacearum
          Length = 1038

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 72/113 (63%), Gaps = 1/113 (0%)

Query: 1   MLIGENSRKVSQAVDKKMQEINRT-LPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLV 59
           +L  EN  +V   V   ++++N   LP+ V+ V   DR+ LVD  + TV K L+EG  LV
Sbjct: 286 LLKNENPSRVMAGVHDAVRDLNEHILPKDVKIVPYIDRSKLVDATVHTVGKTLIEGMTLV 345

Query: 60  VAVLFLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
             VL LFLG+ RAAII A  IPL++L  F  M   K+ ANLLSLGA+DFGII+
Sbjct: 346 SIVLLLFLGSPRAAIIVAITIPLSLLTAFILMHHFKIPANLLSLGAIDFGIIV 398