BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0034.p         (54 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2220 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    69   3e-12
SMa0557 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ...    65   3e-11
RSp1471 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...    62   3e-10
XF1768 [K] COG0583 Transcriptional regulator Xfa Xylella fastidi...    62   3e-10
XF1752 [K] COG0583 Transcriptional regulator Xfa Xylella fastidi...    62   4e-10

>PA2220 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 306

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 3   APHVQSGALKRVMKSWTPTFPGYHLYYASRRHSSPAFRLLVEALRY 48
           APH++ G L RV+++W P FPGY+LYY +RR  SPAF L+V+ALRY
Sbjct: 250 APHIEEGRLLRVLENWCPLFPGYYLYYPNRRQPSPAFSLVVDALRY 295


>SMa0557 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 295

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 1   MVAPHVQSGALKRVMKSWTPTFPGYHLYYASRRHSSPAFRLLVEALR 47
           +V  ++++G L +++  WTP FPGYHLYY SRRH SPAF LLVEAL+
Sbjct: 248 VVREYLKNGRLVQILDDWTPPFPGYHLYYPSRRHPSPAFTLLVEALK 294


>RSp1471 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 297

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 1   MVAPHVQSGALKRVMKSWTPTFPGYHLYYASRRHSSPAFRLLVEALR 47
           +  PHV +G LK V++ W PTFPGYH+YY SRR SS A  L+++ALR
Sbjct: 248 LAQPHVAAGRLKWVLEDWFPTFPGYHVYYPSRRQSSRALTLVIDALR 294


>XF1768 [K] COG0583 Transcriptional regulator Xfa Xylella fastidiosa 9a5c
          Length = 313

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 5   HVQSGALKRVMKSWTPTFPGYHLYYASRRHSSPAFRLLVEALRY 48
           H+++G L  V++ W PTFPGYHLYYA+RR  +PA  L++EALR+
Sbjct: 269 HIEAGRLVPVLQDWWPTFPGYHLYYANRRQIAPALALVIEALRW 312


>XF1752 [K] COG0583 Transcriptional regulator Xfa Xylella fastidiosa 9a5c
          Length = 324

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 3   APHVQSGALKRVMKSWTPTFPGYHLYYASRRHSSPAFRLLVEALRY 48
           APH++ G L RV++ W   F GY LYY SRR  SPAF L+V+ALRY
Sbjct: 250 APHIEEGRLMRVLEDWCEPFSGYFLYYPSRRQPSPAFSLVVDALRY 295