BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0021.p (584 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1027 [T] COG5001 Predicted signal transduction protein contai... 260 7e-69 CC0896 Non COG 246 1e-64 RSc1545 [T] COG5001 Predicted signal transduction protein contai... 241 4e-63 PA0285_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 192 2e-48 PA4367_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 191 4e-48 >AGl1027 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 648 Score = 260 bits (664), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 149/418 (35%), Positives = 226/418 (54%), Gaps = 7/418 (1%) Query: 139 LLAENDPLTGLANRYCFDNKLATTLERARQEDMRFGILFMDLDNFKLLNDCYGHSAGNML 198 LLA D LTGL NR F L L AR++ R + +DLD FK +ND YGHS G+ L Sbjct: 219 LLANIDSLTGLPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRL 278 Query: 199 LKIVAKRLLGALHPGEMAARLGGDEFAIIAQDISGTQDLIDLSARIMKAMEDPFVFDNIE 258 L V+KRL L + A RLGGDEFAI+A I L+ + I + + P+ Sbjct: 279 LINVSKRLTANLKASK-AFRLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGT 337 Query: 259 QIVTCSIGIASYPECARSAADLCRYADLAMYQVKNTHRNGFYFYSEQLQAKVLYRMGIEN 318 V+ S+GIA +P A + L AD A+Y K T R + + + ++ IE+ Sbjct: 338 VHVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIEH 397 Query: 319 ALRSKDLAEQLRVFYQPFVDANSLAICGAEVLVRWQHPLLGLLAPDRFISIAEECGMMAI 378 L+ DL +L V +QP VD G E L RW P+LG + P +F +IAE G++ Sbjct: 398 LLKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVGS 457 Query: 379 IDGHTRQASLRQLRAWREEGMIDKSFQMAINISASTLRDRSFPDAFRRDLERTDLDDVRL 438 + + +L W D S +++ N+SA L + +E + D RL Sbjct: 458 LTRPLLKMALASASTW------DPSLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRL 511 Query: 439 SVEVTENILVADFTNAAAALTQLREMGVIIALDDFGTGYSSMSYLRQLPISVLKIDKSFM 498 +E+TE DF ++ LR +G I+LDDFGTGYSS++ L LP++ +KID+SF+ Sbjct: 512 DLEITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFV 571 Query: 499 QQVPQSPEDVRLLRSIITLAKSLDLEVIVEGVETLAQMQLCQALGADILQGYYFSKPL 556 + + P ++++S++ L++ ++LE +VEGVET A++ + LGA ++QGY ++ PL Sbjct: 572 TDLHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPL 629 >CC0896 Non COG Length = 677 Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/422 (36%), Positives = 225/422 (53%), Gaps = 12/422 (2%) Query: 140 LAENDPLTGLANRYCFDNKLATTLERARQEDMRFGILFMDLDNFKLLNDCYGHSAGNMLL 199 LA D LT L NR + +L +E ARQ F +DLD+FK +ND +GH+ G+ LL Sbjct: 228 LANLDSLTDLPNRRRYFAELDARVEAARQSGRGFVAGVIDLDDFKPINDAFGHATGDRLL 287 Query: 200 KIVAKRLLGALHPGEMAARLGGDEFAIIAQDISGTQDLIDLSARIMKAMEDPFVFDNIEQ 259 V +RL +AARLGGDEF +I L L + +++ + + Sbjct: 288 IEVGRRLKAFDGAPILAARLGGDEFGLIIDAALEPDALRVLGRELCASLQATYDLRGVRA 347 Query: 260 IVTCSIGIASYPECARSAADLCRYADLAMYQVKNTHRNGFYFYSEQLQAKVLYRMGIENA 319 V SIG +P A ++ L AD A+Y K + + E+ +A + +E A Sbjct: 348 QVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAVVFDERHEAAIRDMAVVEQA 407 Query: 320 LRSKDLAEQLRVFYQPFVDANSLAICGAEVLVRWQHPLLGLLAPDRFISIAEECGMMAII 379 LRS DL +++ V +QP VD S E L RW P +G + PD FI AE G + I Sbjct: 408 LRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPDVFIGAAERSGQIVEI 467 Query: 380 DGHTRQASLRQLRAWREEGMIDKSFQMAINISASTLRDRSFPDAFRRDL---ERTDLDDV 436 +LR++RAW +++IN+SA RD + + RR L + + Sbjct: 468 TRLLVAKALREMRAW------PMDVRVSINLSA---RDIASMENVRRLLAIVSESCIAPH 518 Query: 437 RLSVEVTENILVADFTNAAAALTQLREMGVIIALDDFGTGYSSMSYLRQLPISVLKIDKS 496 R+ E+TE +V DF A AL E+GV ALDDFGTG+SS+S+LR LP+ LKID S Sbjct: 519 RIDFEITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRLLPLDKLKIDAS 578 Query: 497 FMQQVPQSPEDVRLLRSIITLAKSLDLEVIVEGVETLAQMQLCQALGADILQGYYFSKPL 556 F+ + +P ++R+++ L ++L +E +VEGVET AQ ALGA ++QGY+F++P+ Sbjct: 579 FVSDIEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHFARPM 638 Query: 557 IA 558 A Sbjct: 639 PA 640 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 241 bits (614), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 153/446 (34%), Positives = 237/446 (53%), Gaps = 13/446 (2%) Query: 131 LDAHRRLQLLAENDPLTGLANRYCFDNKLATTLERARQEDMRFGILFMDLDNFKLLNDCY 190 ++A R++ LA D LTGLANR F +L L + R G+L++DLD FKL+ND Sbjct: 332 VEAENRIRQLAHYDTLTGLANRTNFREQLDARLA---APEARLGLLYIDLDGFKLVNDTK 388 Query: 191 GHSAGNMLLKIVAKRLLGAL-HPGEMAARLGGDEFAIIAQDISGTQDLIDLSARIMKAME 249 GH AG+ LL+ VA+RL PG ARLGGDEFA++ + L+ +++A+ Sbjct: 389 GHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADR-AATLATALIEALG 447 Query: 250 DPFVFDNIEQI-VTCSIGIASYPECARSAADLCRYADLAMYQVKNTHRNGFYFYSEQLQA 308 P+ + + + SIGIA P R +L AD+A+Y K + + ++ Sbjct: 448 APYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFCADMET 507 Query: 309 KVLYRMGIENALRSK-DLAEQLRVFYQPFVDANSLAICGAEVLVRWQHPLLGLLAPDRFI 367 ++ R +E LR+ + ++L VFYQP VD + + E LVRW H G + PD F+ Sbjct: 508 RIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVPPDEFV 567 Query: 368 SIAEECGMMAIIDGHTRQASLRQLRAWREEGMIDKSFQMAINISASTLRDRSFPDAFRRD 427 IAE+ G++ + + R+ W E+G ++A+N+S L + Sbjct: 568 PIAEQSGLIDQLGRFVLHRACREATRW-EDGA-----RVAVNVSPMQLGKATLAQTVHAA 621 Query: 428 LERTDLDDVRLSVEVTENILVADFTNAAAALTQLREMGVIIALDDFGTGYSSMSYLRQLP 487 L + L RL +EVTE L+ + + L QL +MGV +ALDDFGTGYSS+++LR P Sbjct: 622 LIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLRAFP 681 Query: 488 ISVLKIDKSFMQQVPQSPEDVRLLRSIITLAKSLDLEVIVEGVETLAQMQLCQALGADIL 547 +KID+SF++ + + P+ L+R+I L + L + + EGVET A ++ + G Sbjct: 682 FDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGCTEA 741 Query: 548 QGYYFSKPLIASEFEYSLLAADSNRT 573 QGYY+ +P + E + A RT Sbjct: 742 QGYYYGRPAPSDEDRPRVEACGPART 767 >PA0285_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 274 Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 100/267 (37%), Positives = 158/267 (59%), Gaps = 2/267 (0%) Query: 299 FYFYSEQLQAKVLYRMGIENALRSKDLAEQLRVFYQPFVDANSLAICGAEVLVRWQHPLL 358 + FY+ L A+ + +E+ALR ++LRV YQP D S I G E LVRWQHP Sbjct: 2 YAFYTRVLTARARAHVQVESALRHALEHDELRVHYQPVHDLASGRIVGVESLVRWQHPER 61 Query: 359 GLLAPDRFISIAEECGMMAIIDGHTRQASLRQLRAWREEGMIDKSFQMAINISASTLRDR 418 GL+ P F+ +AEECG++A +D + + RQ+R W++ G ++ F +A+N+S+ Sbjct: 62 GLVPPGEFVPVAEECGLIAALDNWVLKRACRQMREWQQRG-VELEF-VAVNVSSRLFNRG 119 Query: 419 SFPDAFRRDLERTDLDDVRLSVEVTENILVADFTNAAAALTQLREMGVIIALDDFGTGYS 478 + LE + L+ L +EVTE+ ++ DF + L +LR +GV +A+DDFGTGYS Sbjct: 120 GLEERIANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYS 179 Query: 479 SMSYLRQLPISVLKIDKSFMQQVPQSPEDVRLLRSIITLAKSLDLEVIVEGVETLAQMQL 538 S+ L++LP+ LKID+ F+ +P + +D + R+I+ LA+S+ L V+ EG+E Q Sbjct: 180 SLMRLKRLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALF 239 Query: 539 CQALGADILQGYYFSKPLIASEFEYSL 565 + G D QGY++ +P A + L Sbjct: 240 LREHGCDFGQGYWYGRPQPAEALRFDL 266 >PA4367_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 267 Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 107/249 (42%), Positives = 143/249 (57%), Gaps = 2/249 (0%) Query: 313 RMGIENALRSKDLAEQLRVFYQPFVDANSLAICGAEVLVRWQHPLLGLLAPDRFISIAEE 372 R +E LR +L + YQP VD + G E L+RWQHPL G + PD FI +AE+ Sbjct: 2 RRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIPLAEQ 61 Query: 373 CGMMAIIDGHTRQASLRQLRAWREEGMIDKSFQMAINISASTLRDRSFPDAFRRDLERTD 432 G + I + RQLR W ++G D +MA+N+S L + P L+ Sbjct: 62 NGSIFSIGEWVLDQACRQLREWHDQGFDD--LRMAVNLSTVQLHHNALPRVVSNLLQVYR 119 Query: 433 LDDVRLSVEVTENILVADFTNAAAALTQLREMGVIIALDDFGTGYSSMSYLRQLPISVLK 492 L L +EVTE L+ D + AA L LR G +IA+DDFGTGYSS+SYL+ LP+ +K Sbjct: 120 LPARSLELEVTETGLMEDISTAAQHLLSLRRAGALIAIDDFGTGYSSLSYLKSLPLDKIK 179 Query: 493 IDKSFMQQVPQSPEDVRLLRSIITLAKSLDLEVIVEGVETLAQMQLCQALGADILQGYYF 552 IDKSF+Q + Q +D ++R+II L KSL ++VI EGVET Q A G + QGY + Sbjct: 180 IDKSFVQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCNEGQGYLY 239 Query: 553 SKPLIASEF 561 SKPL A E Sbjct: 240 SKPLPAREL 248