BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0017.p         (64 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1223 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    57   8e-09

>PA1223 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 297

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 5   DFVALVPELLVLDLQENLTVVESPFPVPGFPVSMLWHERNHAHGGHRWLRDVI 57
           D VAL+P  LV + ++ L VVE+P  V G+ ++MLWHER+H    HRWLR++I
Sbjct: 242 DLVALLPSRLVRE-RDRLRVVEAPLEVSGYDLAMLWHERSHRDPAHRWLRELI 293