BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0016.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 239 5e-63 ybhD [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 223 5e-58 ZybhD [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 222 6e-58 ECs0796 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 222 6e-58 mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 219 4e-57 >AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 298 Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 124/291 (42%), Positives = 185/291 (63%), Gaps = 1/291 (0%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 + +IL ++AF A+ + SF AA ALH++Q A+T R++KLE +G L+ERTTR +A T Sbjct: 3 INCEILDLRAFQAVVELESFHRAADALHISQPALTRRIQKLEQAIGAPLLERTTRHVAPT 62 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 +GQ+ +P RR+L+E +G+L +++ G RRG + +ACVPT +LP +++ +S +YP Sbjct: 63 AMGQEVMPLVRRMLEEFDGSLFAMKD-GAQRRGLITMACVPTAAFYFLPTVIKTFSKQYP 121 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 H R++I D ++ AV R E EFGIN+ P+LA PL D +VL HPLA Sbjct: 122 HIRLRIRDLTANEGLQAVARGEVEFGINLMGNSDPDLAFEPLIDDPFVLAMRKDHPLAAF 181 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 W QL+P+PL+ SGNRTLLD L + L L FYEV +T++GLV G+GI+ Sbjct: 182 ETIQWDQLEPHPLVVVDRSSGNRTLLDGALARHNLKLNWFYEVTHLNTSLGLVEAGLGIS 241 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMIL 291 V+P LA + +P + +V PVVSR++ ++ R+S+ LSPAA+ M+L Sbjct: 242 VLPRLATPQDEHPFLVTRPIVNPVVSRTIGIVQRRSSALSPAAEKFVQMLL 292 >ybhD [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 338 Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 113/292 (38%), Positives = 177/292 (60%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MK ++ ++AFV +A+ SF AA L++TQ A+T R++K+E+ L V L ERTTR + LT Sbjct: 22 MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLT 81 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 + G+ LP+AR L+ + + L IR+ RG V +AC+PT +LP + ++ YP Sbjct: 82 KAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYP 141 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 + +++IL+ ++ ++VL E++FGINM + + PL + +VL C HPLAK+ Sbjct: 142 NIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKK 201 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 + W +L Y +I SGNR L++ L L FYEV+ ST++GLV G+GI+ Sbjct: 202 QLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGIS 261 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMILT 292 +PGLA+ Y + I LVEPV+ R+L +I RK A LSPAA+ + +++ Sbjct: 262 ALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLIN 313 >ZybhD [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 338 Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 177/292 (60%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MK ++ ++AFV +A+ SF AA L++TQ A+T R++K+E+ L + L ERTTR + LT Sbjct: 22 MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLT 81 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 + G+ LP+AR L+ + + L IR+ RG V +AC+PT +LP + ++ YP Sbjct: 82 KAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYP 141 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 + +++IL+ ++ ++VL E++FGINM + + PL + +VL C HPLAK+ Sbjct: 142 NIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKK 201 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 + W +L Y +I SGNR L++ L L FYEV+ ST++GLV G+GI+ Sbjct: 202 QLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGIS 261 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMILT 292 +PGLA+ Y + I LVEPV+ R+L +I RK A LSPAA+ + +++ Sbjct: 262 ALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLIN 313 >ECs0796 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 338 Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 177/292 (60%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MK ++ ++AFV +A+ SF AA L++TQ A+T R++K+E+ L + L ERTTR + LT Sbjct: 22 MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLT 81 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 + G+ LP+AR L+ + + L IR+ RG V +AC+PT +LP + ++ YP Sbjct: 82 KAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYP 141 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 + +++IL+ ++ ++VL E++FGINM + + PL + +VL C HPLAK+ Sbjct: 142 NIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKK 201 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 + W +L Y +I SGNR L++ L L FYEV+ ST++GLV G+GI+ Sbjct: 202 QLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGIS 261 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMILT 292 +PGLA+ Y + I LVEPV+ R+L +I RK A LSPAA+ + +++ Sbjct: 262 ALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLIN 313 >mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 179/291 (61%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 + +IL ++AF+++ + SF AA ALH++Q A++ R++KLE +G ++ERTTR ++ T Sbjct: 3 INCEILDLRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVSAT 62 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 +G + +P RR+L+E +G+L +R+ G R G V IAC+PT +LP +++ ++ YP Sbjct: 63 ALGIELVPLVRRMLEEFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEEYP 122 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 + R +ILD ++ AV R E EFGIN+ P+L L D +VL HPLA + Sbjct: 123 NIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARRDHPLAAK 182 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 WA L+PY LI SGNRTLLD L + + LR FYEV ST++GLV G+GI+ Sbjct: 183 PSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLGIS 242 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMIL 291 V+P +A G +P + + +P +SR++ ++ R+ LSPAA+ M++ Sbjct: 243 VLPRMATPGGDHPFLITRPIRDPEISRTIGVVRRRGGTLSPAAERFLKMLI 293