BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0242.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa                     133   9e-32
VCA1096 [T] COG0784 FOG Vch Vibrio cholerae                           124   4e-29
RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum                    101   3e-22
SMc03006 [T] COG0784 FOG Sme Sinorhizobium meliloti                   101   4e-22
all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                     101   5e-22

>PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 121

 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 85/115 (73%)

Query: 1   LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLDGLSFV 60
           LIVDDS S+RQ ++  LKSAGY+V+EAADG E L K   + ++LV +D NMPN+DGLS +
Sbjct: 6   LIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSKSYSLVFTDQNMPNMDGLSLI 65

Query: 61  REMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 115
           R ++ +  Y+  P++MLTTESS+A KQ+G++AG   W+ KPF PP LL+   K++
Sbjct: 66  RSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVL 120


>VCA1096 [T] COG0784 FOG Vch Vibrio cholerae
          Length = 125

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 80/115 (69%)

Query: 1   LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLDGLSFV 60
           L VDDS S+RQ ++  L+ AGY+VE AADG EAL K    +F+++ISD+NMP + G  FV
Sbjct: 11  LAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKARFDVIISDVNMPVMTGFEFV 70

Query: 61  REMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 115
           + ++    YKFTP++MLTTE+S  +KQEGKA G   W+ KPF P  LL  + +++
Sbjct: 71  KAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125


>RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 137

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 78/119 (65%), Gaps = 3/119 (2%)

Query: 1   LIVDDSFSLRQTITAALKSAGYQVEEAADG---LEALKKLDGRKFNLVISDLNMPNLDGL 57
           L+VDDS S+R+ I   L++ G+ V EA DG   LEA+++      +LVI+D  MP +DGL
Sbjct: 7   LVVDDSTSIRRMIATCLRACGFAVTEATDGAAALEAVQRQADGSHHLVITDQVMPAMDGL 66

Query: 58  SFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLVQ 116
           + +R ++ +PAY  TP++MLTTE+    + + +AAG   ++ KPF P  L D+V +L++
Sbjct: 67  TLIRALRTLPAYADTPILMLTTEADSTIRDQARAAGATGFLPKPFDPDGLTDSVMQLLE 125


>SMc03006 [T] COG0784 FOG Sme Sinorhizobium meliloti
          Length = 121

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 73/114 (64%)

Query: 1   LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLDGLSFV 60
           L VDDS ++R  +   L +AG++  +A DG+E L+KLD    +++++D+NMP LDG  F+
Sbjct: 6   LTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLDTANPDVIVTDINMPRLDGFGFI 65

Query: 61  REMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKL 114
             +++   Y+  P+++LTTES   +K   + AG   W+ KPF P  L+DA+ ++
Sbjct: 66  EGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKPFDPTKLIDAIERV 119


>all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 167

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 76/116 (65%), Gaps = 1/116 (0%)

Query: 1   LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGR-KFNLVISDLNMPNLDGLSF 59
           L+VDD+ SLRQT++  L+ +GYQV +A +G EAL++L    +  LV+SDL MP ++G  F
Sbjct: 39  LVVDDAISLRQTLSLTLQKSGYQVIQAQNGAEALEQLQRHPEIQLVVSDLEMPRMNGFEF 98

Query: 60  VREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 115
           +  ++  P Y   PVI+LT+ S+E  +Q  K  G +A++ KP+L   L++ +  L+
Sbjct: 99  LSHIQHNPQYTKIPVIILTSRSAEKHRQLAKELGAKAYLSKPYLEHELINHIESLI 154