BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0238.p         (52 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2445 [J] COG0227 Ribosomal protein L28 Rso Ralstonia solanace...    71   6e-13
NMB0321 [J] COG0227 Ribosomal protein L28 Nme Neisseria meningit...    66   2e-11
NMA2166 [J] COG0227 Ribosomal protein L28 NmA Neisseria meningit...    66   2e-11
XF1206 [J] COG0227 Ribosomal protein L28 Xfa Xylella fastidiosa ...    59   3e-09

>RSc2445 [J] COG0227 Ribosomal protein L28 Rso Ralstonia solanacearum
          Length = 77

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 35/36 (97%)

Query: 1  MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVS 36
          MVGNNVSHANNKTKRRFLPNLQNRR +VESENRWVS
Sbjct: 13 MVGNNVSHANNKTKRRFLPNLQNRRFWVESENRWVS 48


>NMB0321 [J] COG0227 Ribosomal protein L28 Nme Neisseria meningitidis MC58
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/35 (88%), Positives = 33/35 (94%)

Query: 1  MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWV 35
          M GNNVSHANNKTKRRFLPNLQ+RR +VESENRWV
Sbjct: 13 MSGNNVSHANNKTKRRFLPNLQSRRFWVESENRWV 47


>NMA2166 [J] COG0227 Ribosomal protein L28 NmA Neisseria meningitidis
          Z2491
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/35 (88%), Positives = 33/35 (94%)

Query: 1  MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWV 35
          M GNNVSHANNKTKRRFLPNLQ+RR +VESENRWV
Sbjct: 13 MSGNNVSHANNKTKRRFLPNLQSRRFWVESENRWV 47


>XF1206 [J] COG0227 Ribosomal protein L28 Xfa Xylella fastidiosa 9a5c
          Length = 78

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 29/35 (82%)

Query: 1  MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWV 35
            GNNVSHANNKT+RRFLPNL  RR +V SENRWV
Sbjct: 13 QTGNNVSHANNKTRRRFLPNLHKRRFWVASENRWV 47