BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0229.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport...   119   1e-27
TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ...    87   1e-17
mlr9038 Non COG                                                        85   4e-17
RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport...    85   5e-17
AGc2606_2 [E] COG0411 ABC-type branched-chain amino acid transpo...    84   6e-17

>RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 257

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 70/78 (89%), Gaps = 1/78 (1%)

Query: 9   LDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEG 68
           LD+P AAGMNATEK+ LR LL KI+++GKTILLIEHDVKL+MGLCNR+TVLDYGK IA+G
Sbjct: 178 LDEP-AAGMNATEKVELRGLLDKIRSDGKTILLIEHDVKLVMGLCNRLTVLDYGKVIAQG 236

Query: 69  VPADVQKNPAVIEAYLGA 86
           +P +VQ N AVIEAYLGA
Sbjct: 237 LPHEVQSNQAVIEAYLGA 254


>TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Tma Thermotoga maritima
          Length = 284

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 8   MLDDPRAAGMNATEKLALRELLVKIQAEGK-TILLIEHDVKLMMGLCNRITVLDYGKPIA 66
           +LD+P AAGMN  E   L E + +I+ +   T+LLIEHD+K++MG+C RI V+DYG+ IA
Sbjct: 201 LLDEP-AAGMNPKETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGICERIIVMDYGRIIA 259

Query: 67  EGVPADVQKNPAVIEAYLG 85
           EG P ++Q +P VIEAYLG
Sbjct: 260 EGTPKEIQNDPRVIEAYLG 278


>mlr9038 Non COG
          Length = 252

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 62/78 (79%), Gaps = 1/78 (1%)

Query: 8   MLDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAE 67
           +LD+P  AG+NATEK  +   + K++A+  +ILL+EHD++ +M LC+RITVL++G+ IAE
Sbjct: 169 LLDEP-LAGLNATEKAEVANRIEKLRADDVSILLVEHDMRSVMRLCDRITVLNFGQVIAE 227

Query: 68  GVPADVQKNPAVIEAYLG 85
           G PA++ ++P VI+AYLG
Sbjct: 228 GTPAEIGRHPDVIKAYLG 245


>RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 265

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 8   MLDDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAE 67
           +LD+P  AGMN  EK+ L   +  I+A G TI +IEHD++ +MGLC RI VL++G+ IAE
Sbjct: 172 LLDEP-VAGMNTGEKVDLMAEIENIRARGYTIFMIEHDMRFVMGLCERIAVLNFGRIIAE 230

Query: 68  GVPADVQKNPAVIEAYL 84
           G P  ++ NP VIEAYL
Sbjct: 231 GPPEAIRNNPQVIEAYL 247


>AGc2606_2 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 272

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 10  DDPRAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGV 69
           D+P AAG+   EK  L +LL K++AEG ++LL+EHD+  +MGL + I VLD+G  IAEG 
Sbjct: 195 DEP-AAGLRHGEKQELADLLKKLRAEGVSVLLVEHDMGFVMGLVDHIVVLDFGTLIAEGK 253

Query: 70  PADVQKNPAVIEAYLGA 86
           PAD++++PAVI AYLG 
Sbjct: 254 PADIRQHPAVIAAYLGG 270