BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0221.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0043 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptid...   274   6e-74
YPO0106 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptid...   243   2e-64
HI0496 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptida...   241   5e-64
PM1749 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptida...   239   2e-63
hslV [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase...   237   1e-62

>RSc0043 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Rso Ralstonia solanacearum
          Length = 178

 Score =  274 bits (701), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 141/178 (79%), Positives = 162/178 (91%)

Query: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60
           MEQ+HGTTI+SVRRGNQVALGGDGQVTLGNIVMKG+ARKVR +Y GKVLVGFAG TADAF
Sbjct: 1   MEQYHGTTIVSVRRGNQVALGGDGQVTLGNIVMKGTARKVRTIYDGKVLVGFAGATADAF 60

Query: 61  TLLDLFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLE 120
           +LLD FEAKL+K+QG+L+RA+V+LAKDWRTDR LR LEAML+ ADR++TLVITGNGDVL+
Sbjct: 61  SLLDRFEAKLQKYQGHLLRAAVDLAKDWRTDRALRHLEAMLIVADRESTLVITGNGDVLD 120

Query: 121 PNDGIGAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETLD 178
           P  GI AIGSGG+YAQSAAKAL ENTEL P ++V+KSL IAGELCIYTN N +IETL+
Sbjct: 121 PEGGIAAIGSGGAYAQSAAKALMENTELAPRDVVEKSLRIAGELCIYTNTNFVIETLE 178


>YPO0106 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Ype Yersinia pestis
          Length = 174

 Score =  243 bits (619), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 142/171 (83%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLDLF 66
           TTI+SVRR   V +GGDGQVTLGN VMKG+A+KVR+LY+ KV+ GFAGGTADAFTL +LF
Sbjct: 2   TTIVSVRRDGHVVIGGDGQVTLGNTVMKGNAKKVRRLYNNKVIAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLEPNDGIG 126
           E KLE HQG+L +A+VELAKDWRTDRMLR+LEA+L  AD   +L+ITGNGDV++P D + 
Sbjct: 62  ERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPEDDLI 121

Query: 127 AIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETL 177
           AIGSGG YAQSAA+AL ENTEL   +IV+KSL+IAG++CIYTN    IE L
Sbjct: 122 AIGSGGPYAQSAARALLENTELGARDIVEKSLSIAGDICIYTNRFQTIEEL 172


>HI0496 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Hin Haemophilus influenzae
          Length = 175

 Score =  241 bits (615), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/172 (69%), Positives = 145/172 (84%), Gaps = 1/172 (0%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLDLF 66
           TTI+SVRR  QV +GGDGQV+LGN VMKG+ARKVR+LY+GKVL GFAGGTADAFTL +LF
Sbjct: 2   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLEP-NDGI 125
           E KLE HQG+L++++VELAKDWRTDR LR+LEAML+ AD   +L+ITG GDV++P  D I
Sbjct: 62  ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 121

Query: 126 GAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETL 177
            AIGSGG+YA SAA+AL ENTEL+  EIV+KSL IAG++C++TN N  IE L
Sbjct: 122 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL 173


>PM1749 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Pmu Pasteurella multocida
          Length = 176

 Score =  239 bits (611), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 145/172 (84%), Gaps = 1/172 (0%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLDLF 66
           TTI+SVRR  QV +GGDGQV+LGN VMKG+ARKVR+LY+GKVL GFAGGTADAFTL +LF
Sbjct: 2   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLEPN-DGI 125
           E KLE HQG+L++++VELAKDWRTDR LR+LEAML+ AD   +L+ITG GDV++P  D I
Sbjct: 62  ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEADQI 121

Query: 126 GAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETL 177
            AIGSGG++A SAA+AL ENTEL+  EIV+KSL IAG++C+YTN +  IE L
Sbjct: 122 LAIGSGGNFALSAARALVENTELSAREIVEKSLKIAGDICVYTNTHFTIEEL 173


>hslV [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Eco Escherichia coli K12
          Length = 176

 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 140/171 (81%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLDLF 66
           TTI+SVRR   V + GDGQ TLGN VMKG+ +KVR+LY+ KV+ GFAGGTADAFTL +LF
Sbjct: 2   TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLEPNDGIG 126
           E KLE HQG+L++A+VELAKDWRTDRMLR+LEA+L  AD   +L+ITGNGDV++P + + 
Sbjct: 62  ERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLI 121

Query: 127 AIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETL 177
           AIGSGG YAQ+AA+AL ENTEL+  EI +K+L IAG++CIYTN  H IE L
Sbjct: 122 AIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEEL 172