BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0220.p (458 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0042 [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase... 664 0.0 YPO0105 [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase... 603 e-172 hslU [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase su... 599 e-171 ZhslU [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase s... 599 e-171 ECs4858 [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase... 599 e-171 >RSc0042 [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit Rso Ralstonia solanacearum Length = 443 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/447 (73%), Positives = 378/447 (84%), Gaps = 7/447 (1%) Query: 12 NMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVG 71 MTP EIVSELDKH++GQ +AK+AVA+ALRNRWRRQQ+ +PLR EITPKNILMIGPTGVG Sbjct: 4 TMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVG 63 Query: 72 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRXF 131 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTI+RDL ++ +KQTRE E +KVR Sbjct: 64 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKVRAK 123 Query: 132 NTLAMAEDRILDVLLPPARDFGFTPDGNASPEKDDKNTTRQTFRKRLREGALDDREIELE 191 A AEDR+LDVL+PP RD GF A PE+ D N RQ FRK+LREG LDD+EIELE Sbjct: 124 AEDA-AEDRLLDVLIPPPRDIGF-----AQPEEKDSNA-RQVFRKKLREGQLDDKEIELE 176 Query: 192 LNDAAPSMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNE 251 + P M+IM PPGMEEMTEQI++MF+GLG +K RK+K+ EA KLL+EEEA KLVNE Sbjct: 177 VAAGMPGMDIMGPPGMEEMTEQIRSMFAGLGQGKKHRRKMKVHEAFKLLVEEEAGKLVNE 236 Query: 252 EELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYGM 311 EELK KAIANVEQNGIVFLDEIDKI +RS++G +VSR GVQRDLLPLVEGTTV+TKYGM Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEHGGGEVSRQGVQRDLLPLVEGTTVSTKYGM 296 Query: 312 IKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQYE 371 IKTDHILFIASGAF LSKPSDLIPELQGRFPIRVELDSLS+ DF+ ILT TDA LTKQY+ Sbjct: 297 IKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQYQ 356 Query: 372 ALLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVD 431 AL+ TE V++ FAD GI+RLAEI+ +VNEK ENIGARRLYTVME+LLE++SF A ++ + Sbjct: 357 ALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGE 416 Query: 432 GLLIDAGYVNERLGELAVDEDMSRYVL 458 + IDA YV+ RL ELA ED+SRYVL Sbjct: 417 TVTIDAAYVDSRLNELAGSEDLSRYVL 443 >YPO0105 [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit Ype Yersinia pestis Length = 443 Score = 603 bits (1555), Expect = e-172, Method: Compositional matrix adjust. Identities = 297/446 (66%), Positives = 359/446 (80%), Gaps = 6/446 (1%) Query: 13 MTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVGK 72 MTP+EIVSELD H++GQ +AKRAVAIALRNRWRR Q+ E LRHE+TPKNILMIGPTGVGK Sbjct: 4 MTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 73 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRXFN 132 TEIARRLAKLA+APFIK+EATKFTEVGYVG++VD+IIRDL D +K R K+R + Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMR-YR 122 Query: 133 TLAMAEDRILDVLLPPARDFGFTPDGNASPEKDDKNTTRQTFRKRLREGALDDREIELEL 192 +AE+RILDVL+PPA++ PD + P + TRQTFRK+LREG LDD+EIE++L Sbjct: 123 AEELAEERILDVLIPPAKNNWGVPDESQEP-----SATRQTFRKKLREGQLDDKEIEIDL 177 Query: 193 NDAAPSMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNEE 252 A +EIMAPPGMEEMT Q+++MF + Q++K RKIKIKEA+KLLIEEEAAKLVN E Sbjct: 178 AAAPMGVEIMAPPGMEEMTNQLQSMFQNIAGQKQKPRKIKIKEALKLLIEEEAAKLVNPE 237 Query: 253 ELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYGMI 312 ELKQ+AI VEQ+GIVF+DEIDKI R Q DVSR GVQRDLLPLVEG TV+TK+GM+ Sbjct: 238 ELKQQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 297 Query: 313 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQYEA 372 KTDHILFIASGAF +S PSDLIPELQGR PIRVEL +L+ DFERILT A LT+QY+A Sbjct: 298 KTDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKA 357 Query: 373 LLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVDG 432 L+ATEGV IEF GI+++AE + VNE+TENIGARRL+TV+E+L+E+IS+ A E+ Sbjct: 358 LMATEGVTIEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESSGQS 417 Query: 433 LLIDAGYVNERLGELAVDEDMSRYVL 458 + IDA YV + L EL DED+SR++L Sbjct: 418 ITIDAEYVGKHLDELVADEDLSRFIL 443 >hslU [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit Eco Escherichia coli K12 Length = 443 Score = 599 bits (1545), Expect = e-171, Method: Compositional matrix adjust. Identities = 295/446 (66%), Positives = 361/446 (80%), Gaps = 6/446 (1%) Query: 13 MTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVGK 72 MTP+EIVSELDKH++GQ AKR+VAIALRNRWRR Q+ E LRHE+TPKNILMIGPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 73 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRXFN 132 TEIARRLAKLA+APFIK+EATKFTEVGYVG++VD+IIRDL D +K R K R + Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR-YR 122 Query: 133 TLAMAEDRILDVLLPPARDFGFTPDGNASPEKDDKNTTRQTFRKRLREGALDDREIELEL 192 +AE+RILDVL+PPA++ + + ++ + + RQ FRK+LREG LDD+EIE++L Sbjct: 123 AEELAEERILDVLIPPAKN-----NWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDL 177 Query: 193 NDAAPSMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNEE 252 A +EIMAPPGMEEMT Q+++MF LG Q++KARK+KIK+AMKLLIEEEAAKLVN E Sbjct: 178 AAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPE 237 Query: 253 ELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYGMI 312 ELKQ AI VEQ+GIVF+DEIDKI R ++ DVSR GVQRDLLPLVEG TV+TK+GM+ Sbjct: 238 ELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 297 Query: 313 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQYEA 372 KTDHILFIASGAF ++KPSDLIPELQGR PIRVEL +L+ +DFERILT +A +T QY+A Sbjct: 298 KTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKA 357 Query: 373 LLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVDG 432 L+ATEGV IEF DSGIKR+AE + VNE TENIGARRL+TV+E+L+EEIS+ A + Sbjct: 358 LMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQN 417 Query: 433 LLIDAGYVNERLGELAVDEDMSRYVL 458 + IDA YV++ L L DED+SR++L Sbjct: 418 ITIDADYVSKHLDALVADEDLSRFIL 443 >ZhslU [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit EcZ Escherichia coli O157:H7 EDL933 Length = 443 Score = 599 bits (1545), Expect = e-171, Method: Compositional matrix adjust. Identities = 295/446 (66%), Positives = 361/446 (80%), Gaps = 6/446 (1%) Query: 13 MTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVGK 72 MTP+EIVSELDKH++GQ AKR+VAIALRNRWRR Q+ E LRHE+TPKNILMIGPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 73 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRXFN 132 TEIARRLAKLA+APFIK+EATKFTEVGYVG++VD+IIRDL D +K R K R + Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR-YR 122 Query: 133 TLAMAEDRILDVLLPPARDFGFTPDGNASPEKDDKNTTRQTFRKRLREGALDDREIELEL 192 +AE+RILDVL+PPA++ + + ++ + + RQ FRK+LREG LDD+EIE++L Sbjct: 123 AEELAEERILDVLIPPAKN-----NWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDL 177 Query: 193 NDAAPSMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNEE 252 A +EIMAPPGMEEMT Q+++MF LG Q++KARK+KIK+AMKLLIEEEAAKLVN E Sbjct: 178 AAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPE 237 Query: 253 ELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYGMI 312 ELKQ AI VEQ+GIVF+DEIDKI R ++ DVSR GVQRDLLPLVEG TV+TK+GM+ Sbjct: 238 ELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 297 Query: 313 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQYEA 372 KTDHILFIASGAF ++KPSDLIPELQGR PIRVEL +L+ +DFERILT +A +T QY+A Sbjct: 298 KTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKA 357 Query: 373 LLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVDG 432 L+ATEGV IEF DSGIKR+AE + VNE TENIGARRL+TV+E+L+EEIS+ A + Sbjct: 358 LMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQN 417 Query: 433 LLIDAGYVNERLGELAVDEDMSRYVL 458 + IDA YV++ L L DED+SR++L Sbjct: 418 ITIDADYVSKHLDALVADEDLSRFIL 443 >ECs4858 [O] COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit Ecs Escherichia coli O157:H7 Length = 443 Score = 599 bits (1545), Expect = e-171, Method: Compositional matrix adjust. Identities = 295/446 (66%), Positives = 361/446 (80%), Gaps = 6/446 (1%) Query: 13 MTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVGK 72 MTP+EIVSELDKH++GQ AKR+VAIALRNRWRR Q+ E LRHE+TPKNILMIGPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 73 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRXFN 132 TEIARRLAKLA+APFIK+EATKFTEVGYVG++VD+IIRDL D +K R K R + Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR-YR 122 Query: 133 TLAMAEDRILDVLLPPARDFGFTPDGNASPEKDDKNTTRQTFRKRLREGALDDREIELEL 192 +AE+RILDVL+PPA++ + + ++ + + RQ FRK+LREG LDD+EIE++L Sbjct: 123 AEELAEERILDVLIPPAKN-----NWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDL 177 Query: 193 NDAAPSMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNEE 252 A +EIMAPPGMEEMT Q+++MF LG Q++KARK+KIK+AMKLLIEEEAAKLVN E Sbjct: 178 AAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPE 237 Query: 253 ELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYGMI 312 ELKQ AI VEQ+GIVF+DEIDKI R ++ DVSR GVQRDLLPLVEG TV+TK+GM+ Sbjct: 238 ELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 297 Query: 313 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQYEA 372 KTDHILFIASGAF ++KPSDLIPELQGR PIRVEL +L+ +DFERILT +A +T QY+A Sbjct: 298 KTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKA 357 Query: 373 LLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVDG 432 L+ATEGV IEF DSGIKR+AE + VNE TENIGARRL+TV+E+L+EEIS+ A + Sbjct: 358 LMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQN 417 Query: 433 LLIDAGYVNERLGELAVDEDMSRYVL 458 + IDA YV++ L L DED+SR++L Sbjct: 418 ITIDADYVSKHLDALVADEDLSRFIL 443