BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0178.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll9510 [NT] COG2201 Chemotaxis response regulator containing a ...   168   5e-42
PA3703 [NT] COG2201 Chemotaxis response regulator containing a C...   163   2e-40
TP0631 [NT] COG2201 Chemotaxis response regulator containing a C...   124   6e-29
SMa1561 [NT] COG2201 Chemotaxis response regulator containing a ...   107   8e-24
CC0436 [NT] COG2201 Chemotaxis response regulator containing a C...   106   2e-23

>mll9510 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Mlo
           Mesorhizobium loti
          Length = 339

 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 103/149 (69%)

Query: 1   VIVQHIDAAFAPGMAQWLQQQSVLRVRLAVEGDLPRRGEVLLAGSNHHLVFKEGSRLAYV 60
           V+VQH+DA F PG+  WL Q + L +R A E D P+ G VL+A S  HLVFK   +L Y 
Sbjct: 183 VLVQHLDAQFVPGLVDWLGQHTPLPIRPARERDSPQAGTVLVASSADHLVFKSVQQLGYT 242

Query: 61  EGAPTDVYRPSVDAFFHSIVRHWDGKATGVLLTGMGRDGAAGLKALRDNGYHTLAQDQKS 120
                +VYRPSVD FF S  + W G   GVLLTGMGRDGA GL+ LRD G+ T+AQD+ +
Sbjct: 243 PSPKDNVYRPSVDVFFESAAQWWPGSVIGVLLTGMGRDGARGLRQLRDKGHLTIAQDRAT 302

Query: 121 CAVYGMPKAAVALNAAVDVLPVSAMAARL 149
            AVYGMPKAA  + AAVD+LP+SA+ +R+
Sbjct: 303 SAVYGMPKAAADIGAAVDILPLSAIGSRI 331


>PA3703 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Pae
           Pseudomonas aeruginosa
          Length = 335

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 106/149 (71%)

Query: 1   VIVQHIDAAFAPGMAQWLQQQSVLRVRLAVEGDLPRRGEVLLAGSNHHLVFKEGSRLAYV 60
           V+VQH+D  FA GMA+WL  +S L VRLA +G+ P  G++LLAG+N+H+       L Y 
Sbjct: 182 VLVQHVDEVFAAGMAEWLASESKLPVRLARDGEPPIPGQILLAGTNNHIRLLRNGSLVYT 241

Query: 61  EGAPTDVYRPSVDAFFHSIVRHWDGKATGVLLTGMGRDGAAGLKALRDNGYHTLAQDQKS 120
               + VYRPS+D FF S+  +W G A GVLLTGMGRDGA GLK +R+ G+ T+AQDQ S
Sbjct: 242 AEPRSFVYRPSIDVFFESVANYWRGDAVGVLLTGMGRDGAQGLKQMRERGFLTIAQDQAS 301

Query: 121 CAVYGMPKAAVALNAAVDVLPVSAMAARL 149
           CAVYGMPKAA A++AAV +L +  +A RL
Sbjct: 302 CAVYGMPKAAAAIDAAVQILSLEKIAPRL 330


>TP0631 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Tpa
           Treponema pallidum
          Length = 403

 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 90/154 (58%), Gaps = 5/154 (3%)

Query: 1   VIVQHIDAAFAPGMAQWLQQQSVLRVRLAVEGDLPRRGEVLLAGSNHHLVFKEGSRLAYV 60
           V+VQH+ A F    A  L Q   L V+ A EGDL RRG VL+A  + HL  +  S LA V
Sbjct: 242 VVVQHMPAGFTREFAYSLNQVCALEVKEAQEGDLVRRGRVLIAPGDRHLTVERRS-LATV 300

Query: 61  ----EGAPTDVYRPSVDAFFHSIVRHWDGKATGVLLTGMGRDGAAGLKALRDNGYHTLAQ 116
                  P + +RPSVD  F S+ RH++ +A G+L+TGMGRDGAA L  L   G  T+AQ
Sbjct: 301 AHINSDEPENGHRPSVDVLFESVARHFENRALGILMTGMGRDGAAQLARLYTEGSRTIAQ 360

Query: 117 DQKSCAVYGMPKAAVALNAAVDVLPVSAMAARLQ 150
           D  SC VYGMP+ A  L A  + + +  MAA + 
Sbjct: 361 DADSCIVYGMPRVACELGAVGEQVSLDDMAATIN 394


>SMa1561 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Sme
           Sinorhizobium meliloti
          Length = 354

 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 88/155 (56%)

Query: 1   VIVQHIDAAFAPGMAQWLQQQSVLRVRLAVEGDLPRRGEVLLAGSNHHLVFKEGSRLAYV 60
           +IVQH+   F  G+A  L     L V++A  G+L + G V LA  N  L     SRL   
Sbjct: 190 LIVQHMSNGFIDGVAASLNATVPLTVKVARNGELLKPGTVYLAPDNCQLGVSGRSRLRVS 249

Query: 61  EGAPTDVYRPSVDAFFHSIVRHWDGKATGVLLTGMGRDGAAGLKALRDNGYHTLAQDQKS 120
           + AP + ++PS    F SI R + G++  V+LTGMG DG  GL+ALR  G   +AQD+KS
Sbjct: 250 DDAPVNGFKPSGSYLFGSIARAFKGESLAVVLTGMGDDGTEGLRALRMAGGKAIAQDEKS 309

Query: 121 CAVYGMPKAAVALNAAVDVLPVSAMAARLQALLAG 155
             V+GMPK+A+       VLP+ ++A  + A+  G
Sbjct: 310 SVVFGMPKSAIGAGLVDLVLPLESIAENITAIARG 344


>CC0436 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Ccr
           Caulobacter vibrioides
          Length = 344

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 1   VIVQHIDAAFAPGMAQWLQQQSVLRVRLAVEGDLPRRGEVLLA--GSNH-HLVFKEGSRL 57
           VI QH+ A F    A  L + S  +V+ A +G L   G+V +A  G+ H  +V   G R 
Sbjct: 185 VITQHMPATFTASFAARLDRSSGAKVQEASDGALLEPGKVYVAPGGATHLEVVRSAGLRC 244

Query: 58  AYVEGAPTDVYRPSVDAFFHSIVRHWDGKATGVLLTGMGRDGAAGLKALRDNGYHTLAQD 117
             V G P   +RPSVD  F+S+      KA GV+LTGMGRDGA GL  +R  G  TL QD
Sbjct: 245 RLVAGDPVSGHRPSVDVLFNSVAHAVGDKAVGVILTGMGRDGAQGLLTMRKAGAKTLGQD 304

Query: 118 QKSCAVYGMPKAAVALNAAVDVLPVSAM 145
           + SC VYGMP++A  + A    + +S+M
Sbjct: 305 EASCVVYGMPRSAFEIGAVERQVSLSSM 332