BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0103.p (374 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1221 [R] COG2262 GTPases Rso Ralstonia solanacearum 444 e-124 PA4943 [R] COG2262 GTPases Pae Pseudomonas aeruginosa 404 e-112 VC0348 [R] COG2262 GTPases Vch Vibrio cholerae 396 e-110 STM4362 [R] COG2262 GTPases Sty Salmonella typhimurium LT2 385 e-107 hflX [R] COG2262 GTPases Eco Escherichia coli K12 385 e-107 >RSc1221 [R] COG2262 GTPases Rso Ralstonia solanacearum Length = 417 Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust. Identities = 238/352 (67%), Positives = 283/352 (80%), Gaps = 5/352 (1%) Query: 2 RAALVGLDFGKNDFAASLDELFLLAKSAGAEPVITITGRRASPDAALFVGTGKAQEVADA 61 RA LV +DFGK+DF SL EL LLA +AG+EPV +TGRR+ PDAALF+G GKA+EV A Sbjct: 13 RAILVAVDFGKHDFQESLSELALLASTAGSEPVRAVTGRRSRPDAALFIGAGKAEEVKIA 72 Query: 62 VADLQLELVIFNHALSPAQQRNLERVLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 + E+VIFNHALSPAQQRNLER V+DRT LILDIF+QRA+SH GKVQVELA++ Sbjct: 73 ADEDDAEIVIFNHALSPAQQRNLERFFGRHVVDRTGLILDIFSQRAQSHVGKVQVELARV 132 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPG-ETQLETDRRLLGERVKALRAVLAKLRRQHATQ 180 ++ A+RL+R W+HLERQKGGIG+RG E QLE DRR+L ER K L A L +L+RQH TQ Sbjct: 133 RYQASRLVRAWSHLERQKGGIGMRGGPGERQLELDRRMLDERAKRLSAELDRLQRQHDTQ 192 Query: 181 RRARGRSETFSVSLVGYTNAGKSTIFNSVAKAGVYAANQLFATLDTTSRRVYLGEVGHVV 240 RRAR R++ FSVSLVGYTNAGKST+FN++ KA YAANQLFATLDTTSRR+YL +G+VV Sbjct: 193 RRARSRNDAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVV 252 Query: 241 ISDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGAD 300 +SDTVGFIR+LP QLV AFRATLEET+HAD+LLHVVDAAS V+ EQ+EQV+ VL EI A Sbjct: 253 LSDTVGFIRDLPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQMEQVDRVLAEINAS 312 Query: 301 HVPQILVWNKIDAA----GLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAI 348 +PQILV NKIDAA P +E DE G ++RVFVSA GAGL+LLREA+ Sbjct: 313 DIPQILVMNKIDAAEELRSQGPRIERDEAGAVRRVFVSALEGAGLELLREAL 364 >PA4943 [R] COG2262 GTPases Pae Pseudomonas aeruginosa Length = 433 Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust. Identities = 208/352 (59%), Positives = 265/352 (75%), Gaps = 1/352 (0%) Query: 2 RAALVGLDFGKNDFAASLDELFLLAKSAGAEPVITITGRRASPDAALFVGTGKAQEVADA 61 +A LV L+ + E L +SAGAE V ++ R P A +G+GK +E+ D Sbjct: 11 QAVLVHLEGQNPEAREDPQEFQELVRSAGAETVAFVSVSRHQPSAKYLIGSGKVEELHDL 70 Query: 62 VADLQLELVIFNHALSPAQQRNLERVLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +ELVIFNH L+P+Q+RNLER + RVLDRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 71 VKAENVELVIFNHTLTPSQERNLERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQL 130 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +H++TRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL R++ ++ L K+R Q R Sbjct: 131 EHMSTRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQAR 190 Query: 182 RARGRSETFSVSLVGYTNAGKSTIFNSVAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 R R R++ +VSLVGYTNAGKST+FNS+ + VYAANQLFATLD T RR+ L ++G VV+ Sbjct: 191 RGRKRADIPAVSLVGYTNAGKSTLFNSLTASEVYAANQLFATLDPTLRRLQLDDLGPVVL 250 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH+LVEAFRATLEE+ +ADLLLHV+DA P R Q+EQV VL EIGA+ Sbjct: 251 ADTVGFIRHLPHKLVEAFRATLEESSNADLLLHVIDAYEPERDAQVEQVLAVLGEIGANE 310 Query: 302 VPQILVWNKID-AAGLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 +P + V+NK+D +EP ++ D+ GK RV++SA++G GLDLLR+AIA L Sbjct: 311 LPMLEVYNKVDLLPSVEPHIQRDDSGKPVRVWLSAQTGEGLDLLRQAIAELL 362 >VC0348 [R] COG2262 GTPases Vch Vibrio cholerae Length = 429 Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/354 (59%), Positives = 261/354 (73%), Gaps = 5/354 (1%) Query: 2 RAALVGLDFGKNDFAASLDELFLLAKSAGAEPVITITGRRASPDAALFVGTGKAQEVADA 61 RA LV ++F + L E +L SAG + +TG R +P FVG GKAQE+A+A Sbjct: 10 RAVLVHVNFTQRGEWEDLSECKMLISSAGVTTLHVVTGSRQTPHPKYFVGEGKAQEIAEA 69 Query: 62 VADLQLELVIFNHALSPAQQRNLERVLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +VIFNHALSPAQ+RNLER+ + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VQMHVANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +H++TRLIRGWTHLERQKGGIGLRGPGETQLETDRRLL ER+KA+ L K+ +Q R Sbjct: 130 RHISTRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLRERIKAILRRLEKVAKQREQGR 189 Query: 182 RARGRSETFSVSLVGYTNAGKSTIFNSVAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 RAR R+E ++SLVGYTNAGKST+FN + +AGVYAA+QLFATLD T R++ L +VG V+ Sbjct: 190 RARSRAEIPTISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIDLVDVGPAVL 249 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH LV AF+ATL+ET AD+LLHVVDA+ E I+ V VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVETVLQEIDAHE 309 Query: 302 VPQILVWNKIDAAGLE---PTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 VP +LV NKID LE P +E D+ G + V++SA GAG +LL EA++ L Sbjct: 310 VPTLLVMNKID--NLEEQSPRIERDDEGVPRVVWISAMQGAGTELLFEALSERL 361 >STM4362 [R] COG2262 GTPases Sty Salmonella typhimurium LT2 Length = 426 Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/352 (57%), Positives = 256/352 (72%), Gaps = 1/352 (0%) Query: 2 RAALVGLDFGKNDFAASLDELFLLAKSAGAEPVITITGRRASPDAALFVGTGKAQEVADA 61 +A LV + F ++ L E L SAG E + ITG R +P FVG GKA E+A+A Sbjct: 10 QAVLVHIYFSQDKDMEDLQEFESLVSSAGVEAMQVITGSRKAPHPKYFVGEGKAVEIAEA 69 Query: 62 VADLQLELVIFNHALSPAQQRNLERVLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +V+F+HALSPAQ+RNLER+ + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VKATGAAVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +HLATRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL R+ +++ L K+ +Q R Sbjct: 130 RHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLEKVEKQREQGR 189 Query: 182 RARGRSETFSVSLVGYTNAGKSTIFNSVAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 ++R +++ +VSLVGYTNAGKST+FN + +A VYAA+QLFATLD T RR+ + +VG V+ Sbjct: 190 QSRIKADVPTVSLVGYTNAGKSTLFNQITEARVYAADQLFATLDPTLRRIDVADVGETVL 249 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH LV AF+ATL+ET A LLLHVVDAA E IE VN VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE 309 Query: 302 VPQILVWNKIDA-AGLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 +P ++V NKID EP ++ DE K RV++SA+SG G+ L +A+ L Sbjct: 310 IPTLMVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQSGVGIPQLFQALTERL 361 >hflX [R] COG2262 GTPases Eco Escherichia coli K12 Length = 426 Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/352 (56%), Positives = 257/352 (73%), Gaps = 1/352 (0%) Query: 2 RAALVGLDFGKNDFAASLDELFLLAKSAGAEPVITITGRRASPDAALFVGTGKAQEVADA 61 +A LV + F ++ L E L SAG E + ITG R +P FVG GKA E+A+A Sbjct: 10 QAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEA 69 Query: 62 VADLQLELVIFNHALSPAQQRNLERVLKVRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +V+F+HALSPAQ+RNLER+ + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VKATGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGERVKALRAVLAKLRRQHATQR 181 +HLATRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL R+ +++ L ++ +Q R Sbjct: 130 RHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQREQGR 189 Query: 182 RARGRSETFSVSLVGYTNAGKSTIFNSVAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 ++R +++ +VSLVGYTNAGKST+FN + +A VYAA+QLFATLD T RR+ + +VG V+ Sbjct: 190 QSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVL 249 Query: 242 SDTVGFIRELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH LV AF+ATL+ET A LLLHV+DAA E IE VN VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHE 309 Query: 302 VPQILVWNKIDA-AGLEPTVEYDEYGKIQRVFVSAKSGAGLDLLREAIAASL 352 +P +LV NKID EP ++ DE K RV++SA++GAG+ L +A+ L Sbjct: 310 IPTLLVMNKIDMLEDFEPRIDRDEENKPNRVWLSAQTGAGIPQLFQALTERL 361