BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0093.p (211 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 258 7e-69 RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 246 2e-65 YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 227 1e-59 STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 191 1e-48 yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 184 1e-46 >PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 258 bits (659), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 124/211 (58%), Positives = 155/211 (73%), Gaps = 3/211 (1%) Query: 1 MRTRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPEIELELTTNDRFIDLVEQRADIAIR 60 +R + P G+LR++AA PFMLH VVPH+G FR YP+I+LEL TND IDL+EQR D+AIR Sbjct: 86 LRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYPDIQLELNTNDLIIDLLEQRTDVAIR 145 Query: 61 IGELQDSTLHARPLSSARLNIVASPDYLALSCRXCAPESVEALEQHQLIGFSQPDSLNHW 120 IG L DSTLHARPL ++RL+I+ASP+YLA R P S+E L H L+GF+QP+ LN W Sbjct: 146 IGALSDSTLHARPLGASRLHILASPEYLA---RHGTPASIEGLRGHTLLGFTQPEHLNRW 202 Query: 121 PLRHTAGDRYQVRPAIRASSGETIRHLALQGQGIACLSDFMTAADLAASRLVRLLDHYDS 180 P+ H GDR +++P I ASSGET+R LAL QGIACL+ FMT D+ RLV L S Sbjct: 203 PVVHADGDRLEIQPDISASSGETLRQLALSHQGIACLASFMTDRDIQDGRLVPLFAEQMS 262 Query: 181 GFRQKISAVYYHNTQLSRRISCFLDFLQCKL 211 +RQ I AVYY N+QL+ RI CFLDF+Q +L Sbjct: 263 EYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 293 >RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 297 Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/211 (56%), Positives = 153/211 (72%), Gaps = 3/211 (1%) Query: 1 MRTRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPEIELELTTNDRFIDLVEQRADIAIR 60 +R ++P G+LRV+AA+PFMLH + P V FRA YP+IELEL T+DR IDL+E+ D+AIR Sbjct: 86 LRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYPQIELELNTSDRIIDLLEEDTDVAIR 145 Query: 61 IGELQDSTLHARPLSSARLNIVASPDYLALSCRXCAPESVEALEQHQLIGFSQPDSLNHW 120 IG L+DSTL AR L + RL ++ASP YL R P +V+AL H L+GF QP+SLNHW Sbjct: 146 IGALRDSTLRARRLGTRRLRVLASPAYLKAHGR---PRTVDALRHHALLGFVQPESLNHW 202 Query: 121 PLRHTAGDRYQVRPAIRASSGETIRHLALQGQGIACLSDFMTAADLAASRLVRLLDHYDS 180 PLR GDR ++ P ++ASSGET+R LALQG GI CL+DFMTA D A LV++L Sbjct: 203 PLRGPHGDRLRITPTLKASSGETLRQLALQGAGIVCLADFMTARDRRAGDLVQVLPEATV 262 Query: 181 GFRQKISAVYYHNTQLSRRISCFLDFLQCKL 211 +Q I AVYY NTQL+ RI+CFLD L+ +L Sbjct: 263 EIQQPIHAVYYRNTQLASRITCFLDVLEARL 293 >YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 303 Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/213 (55%), Positives = 148/213 (69%), Gaps = 5/213 (2%) Query: 1 MRTRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPEIELELTTNDRFIDLVEQRADIAIR 60 +R KP G+LRV+AA PFM H +VP + FRA YP+I LEL T+D IDL+EQR DIAIR Sbjct: 86 LRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYPQITLELNTDDLNIDLLEQRTDIAIR 145 Query: 61 IGELQDSTLHARPLSSARLNIVASPDYLALSCRXCAPESVEALEQHQLIGFSQPDSLNHW 120 IG L+DST+HAR L ++R+ ++ASP+YL R P +EAL H L+GF+QP+ LN W Sbjct: 146 IGALRDSTIHARLLGASRVRLLASPNYLQ---RHGTPHIIEALADHSLLGFTQPEFLNQW 202 Query: 121 PLRHTAGDRYQVRPAIRASSGETIRHLALQGQGIACLSDFMTAADLAASRLVRLLDHYDS 180 L H G R + P + ASSGET+R LALQG+GIA LSDFMT D A RLV +L Sbjct: 203 SLPHLPGGRSSIIPNLAASSGETLRLLALQGEGIAELSDFMTREDQLAGRLVEVLADQIL 262 Query: 181 GFRQKISAVYYHNTQLSRRISCFLDFL--QCKL 211 Q I+AVYY NTQL+ RI+CFLD++ Q KL Sbjct: 263 ETWQPINAVYYRNTQLAARITCFLDYVSEQIKL 295 >STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/208 (46%), Positives = 135/208 (64%), Gaps = 4/208 (1%) Query: 1 MRTRK-PVGKLRVDAAVPFMLHCVVPHVGAFRAAYPEIELELTTNDRFIDLVEQRADIAI 59 M +R P G LR+DAA P MLH ++P + FR YPEI L L +++ FI+L+E++ D+AI Sbjct: 85 MESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYPEITLSLVSSETFINLIERKVDVAI 144 Query: 60 RIGELQDSTLHARPLSSARLNIVASPDYLALSCRXCAPESVEALEQHQLIGFSQPDSLNH 119 R G L DS+L ARPL ++ I+ASPDY+A R PE+VE L++H +GFS+P SLN Sbjct: 145 RAGTLTDSSLRARPLFTSYRKIIASPDYIA---RFGKPETVEELKRHLCLGFSEPVSLNT 201 Query: 120 WPLRHTAGDRYQVRPAIRASSGETIRHLALQGQGIACLSDFMTAADLAASRLVRLLDHYD 179 WP+ + G ++++ I ++SGET++ L L G GIACLSD+M ++A LV LL Sbjct: 202 WPIACSDGQLHEIKCGISSNSGETLKQLCLNGNGIACLSDYMIDKEIARGELVELLADKR 261 Query: 180 SGFRQKISAVYYHNTQLSRRISCFLDFL 207 SAVYY + +S RI F+DFL Sbjct: 262 LPVEMPFSAVYYSDRAVSTRIRAFIDFL 289 >yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 304 Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 134/208 (64%), Gaps = 4/208 (1%) Query: 1 MRTRK-PVGKLRVDAAVPFMLHCVVPHVGAFRAAYPEIELELTTNDRFIDLVEQRADIAI 59 M TR P G LR+DAA P +LH ++P + FR YPE+ L L +++ I+L+E++ D+AI Sbjct: 85 METRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAI 144 Query: 60 RIGELQDSTLHARPLSSARLNIVASPDYLALSCRXCAPESVEALEQHQLIGFSQPDSLNH 119 R G L DS+L ARPL ++ I+ASPDY++ R PE+++ L+QH +GF++P SLN Sbjct: 145 RAGTLTDSSLRARPLFNSYRKIIASPDYIS---RYGKPETIDDLKQHICLGFTEPASLNT 201 Query: 120 WPLRHTAGDRYQVRPAIRASSGETIRHLALQGQGIACLSDFMTAADLAASRLVRLLDHYD 179 WP+ + G ++V+ + ++SGET++ L L G GIACLSD+M ++A LV L+ Sbjct: 202 WPIARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLSDYMIDKEIARGELVELMADKV 261 Query: 180 SGFRQKISAVYYHNTQLSRRISCFLDFL 207 SAVYY + +S RI F+DFL Sbjct: 262 LPVEMPFSAVYYSDRAVSTRIRAFIDFL 289