BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0088.p (298 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1422 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 412 e-115 PA1145 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 197 2e-50 PA0289 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 188 2e-47 PA0133 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 180 3e-45 mlr6990 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 172 1e-42 >PA1422 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/286 (67%), Positives = 233/286 (81%) Query: 6 DFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDKG 65 D +LLRIFAAVVRHQGFA AQQELNL+TSAISTYM+QLE+ +G +C RGRGGF+LT KG Sbjct: 7 DLRLLRIFAAVVRHQGFAAAQQELNLSTSAISTYMSQLENQLGIVLCHRGRGGFSLTSKG 66 Query: 66 ELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKFP 125 EL ETLR+LGE++ FERY +LKGEL GTL +GVLD+TV+DP+LP+AE IG FS + P Sbjct: 67 ELFHQETLRILGELEGFERYALALKGELRGTLNLGVLDSTVSDPALPLAEVIGAFSREHP 126 Query: 126 GMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQQ 185 +HL+LL++SPYELQ VL+N D+A+G F ++ NGL+YQPLYREQ WLYCSDRHP F Sbjct: 127 AVHLHLLVQSPYELQLSVLENRQDLAIGAFSSRMNGLVYQPLYREQHWLYCSDRHPLFDG 186 Query: 186 RNLRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYIGYLPEHYA 245 R + A +++ +V R YWSQ EL+RHGFK S TVESMEAQLILILSG YIGYLPEHYA Sbjct: 187 RRIPADLITQQRMVGRGYWSQAELARHGFKHSAGTVESMEAQLILILSGGYIGYLPEHYA 246 Query: 246 QSWVEQGRLKVLLPSEFGYQSQFSLVLRRGRSRELPLQAMRELLQT 291 WVEQGRL+ LLP+ FGYQ+ FSL+LRRGRSRE +QA R+ L+T Sbjct: 247 HPWVEQGRLRALLPATFGYQAPFSLILRRGRSREPLIQAFRDQLRT 292 >PA1145 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 300 Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 154/272 (56%) Query: 5 IDFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDK 64 +D +LLRIFA VV+ GF AQ ELN++ S IS ++A LE +G+ +C RG+GGF LT K Sbjct: 8 LDLRLLRIFACVVKCGGFTAAQAELNMSQSNISMHIASLEKRLGYRLCERGKGGFRLTAK 67 Query: 65 GELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKF 124 G +L + + + F Q+L G L G L +G+ D T P +A+ F + Sbjct: 68 GRRVLEASRTMFDAIGLFRDQAQALSGRLVGELYLGLADNLATLPQARFGDALARFQRRD 127 Query: 125 PGMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQ 184 + LNL + SP EL+ V++ +LD+A+ +F L Y+PLYRE+ ++C DRHP F Sbjct: 128 QDVQLNLFVNSPTELELAVIEGELDLAISYFSRSRPSLEYRPLYREEIGVFCGDRHPLFA 187 Query: 185 QRNLRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYIGYLPEHY 244 + ++ V + + + RS AT MEA +L+G ++GYLP HY Sbjct: 188 EAQPTLERIAACDWVMHGFLPENLVLPLRPSRSRATAYHMEAVAHAVLAGTHLGYLPTHY 247 Query: 245 AQSWVEQGRLKVLLPSEFGYQSQFSLVLRRGR 276 A++W+E+GR++ LLP Y + S+++ GR Sbjct: 248 AEAWIERGRMRALLPERLSYPVEHSMIVYAGR 279 >PA0289 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 320 Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/274 (36%), Positives = 150/274 (54%), Gaps = 4/274 (1%) Query: 5 IDFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDK 64 ID ++LR F A+V GF AQ LN + S +S + LE +G+++CRRG GGF LT++ Sbjct: 12 IDLRMLRTFCAIVEAGGFTAAQARLNTSLSRLSVLVRDLEVRLGYSLCRRGNGGFQLTEE 71 Query: 65 GELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKF 124 G+ L L + ++ F + L G L +G +D + LP+ AI +F + Sbjct: 72 GQELYDAALGLFSDIARFREQVRGLGGRDREALHLGCVDGVIGQHCLPLPLAIRLFRQRA 131 Query: 125 PGMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQ 184 P + L L R P EL+ VL+ L +AVG F + +GL YQPL+RE+Q LYC HP F Sbjct: 132 PEVLLKLHTRRPDELEHAVLEERLQLAVGAFHHRLSGLYYQPLFREEQNLYCGSAHPFFA 191 Query: 185 QRNLRAS--AVSEMSVVSRSYWSQTELSRHGFKRSVAT-VESMEAQLILILSGRYIGYLP 241 + + + + V R Y ++ H + + T +MEA L+ SG YIGYLP Sbjct: 192 RADDEPTLGEICAADYVGRGYMAENHRP-HDLRFNQGTDAYTMEAIATLVFSGTYIGYLP 250 Query: 242 EHYAQSWVEQGRLKVLLPSEFGYQSQFSLVLRRG 275 HYA +WV +GR++ + P + Y S+F + R+G Sbjct: 251 THYAATWVAEGRMRAIRPRQLAYDSEFHCITRQG 284 >PA0133 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 305 Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 148/281 (52%), Gaps = 3/281 (1%) Query: 6 DFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDKG 65 D +LLRIF +V F+ A+ L L+ SAIS +M LE +G +C+RGR GFALTD+G Sbjct: 16 DIRLLRIFKTIVECGSFSAAESTLGLSRSAISLHMGDLEKRLGMRLCQRGRAGFALTDEG 75 Query: 66 ELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKFP 125 + T +L ++ F L L G L IG+++ VT P + + A+ + P Sbjct: 76 REVYRATQTLLAALEGFRAEVNDLHQHLRGELNIGIINNLVTLPQMRITHALSALKGQGP 135 Query: 126 GMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQQ 185 + +N+ + +P E++ GVLD L + V + +GL Y PLY E LYCS H F++ Sbjct: 136 QVRINIGMTTPNEIELGVLDGHLHVGVVPLISPLSGLEYLPLYDEHAQLYCSRGHALFER 195 Query: 186 R--NLRASAVSEMSVVSRSYWSQTEL-SRHGFKRSVATVESMEAQLILILSGRYIGYLPE 242 ++ V V+ SY E +RH + A+ E LIL+G +IGYLP Sbjct: 196 ADGDIAVDEVLAADAVAPSYRLPAEAQARHQELNNSASASDREGMAFLILTGNFIGYLPS 255 Query: 243 HYAQSWVEQGRLKVLLPSEFGYQSQFSLVLRRGRSRELPLQ 283 HYA WV G L+ LLP F Y ++V R+GR L L+ Sbjct: 256 HYAADWVAAGMLRPLLPERFHYAIALTIVTRKGRRPNLVLE 296 >mlr6990 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 148/274 (54%), Gaps = 2/274 (0%) Query: 4 GIDFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTD 63 G D L R+F +VVR+ G AQ EL+L+ +S ++ LE +G +C RGR GF+LT+ Sbjct: 5 GSDLHLFRVFESVVRNGGMTAAQMELSLSQPTVSNHLTALEQRLGVKLCERGRRGFSLTE 64 Query: 64 KGELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSK 123 +G + ++ + G +D+ ++ L G + +G++D TDPS +A+AI S Sbjct: 65 EGRRVYEISMEITGMLDAGSARLSRVRSALAGKVGVGIVDCLATDPSFRLADAIAELSKA 124 Query: 124 FPGMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCF 183 P + L+L I P ++ K V +N++DI +G K + YQ LY E+ ++C HP F Sbjct: 125 APEIELDLKIMRPNDITKAVAENEIDIGIGGSDIKVASVQYQILYHEEHAVFCGSSHPLF 184 Query: 184 QQRN--LRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYIGYLP 241 ++ + + ++ V R YW R S +EAQL+++LSG Y+G LP Sbjct: 185 RRNDETITSAECYGHPWVERGYWYGIRRHRFDTAASNRVTFDIEAQLLMVLSGAYLGVLP 244 Query: 242 EHYAQSWVEQGRLKVLLPSEFGYQSQFSLVLRRG 275 H+A+ + +QGRL+ L ++ Y + + R G Sbjct: 245 IHFARVFEQQGRLRRLPLADEAYSADIDVATRTG 278