BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0082.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3430 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 199 6e-51 CC1201 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 191 1e-48 RSc0806 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related... 191 1e-48 RP493 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related e... 136 4e-32 RC0678 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 134 2e-31 >PA3430 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Pae Pseudomonas aeruginosa Length = 259 Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 150/247 (60%), Gaps = 18/247 (7%) Query: 14 RRDLAAAYRLAALFGWDDTLYTHFSVRLPRADNAAPEEDRFLINPFGLMFDEVRASDLLV 73 R DLAA YRL AL GWDD ++TH S ++P ++ FLINPFGLMF E+ AS L+ Sbjct: 23 RVDLAACYRLVALHGWDDLIFTHISAKVPGTED-------FLINPFGLMFHEITASSLVK 75 Query: 74 VDLQGR-VVSGKSDYNVAGFTIHSAVHMAREDAHCVLHTHTLPGMAVAACEQGLLQLNQI 132 VD G+ ++ + N AG+TIHSAVH R D CVLHTHT G+AV+ +QGLL L+Q Sbjct: 76 VDASGKKLMDSPYEINPAGYTIHSAVHEVRHDVECVLHTHTAAGIAVSCQKQGLLPLSQQ 135 Query: 133 STEFHQRVGVHAYEGVAFDLDERTRIQQSLGNNIALLLRHHGLLSVGATVADAFAIMFYL 192 S + HAYEGVA + +E+ R+Q LG + L+L +HGLL+ G ++AD F +MF L Sbjct: 136 SLFVLSSLSYHAYEGVALNHEEKARLQADLGASNFLILPNHGLLTCGGSIADTFLMMFTL 195 Query: 193 NRACEIQMAAAQMATVAGP-VTEIAAHLSQHACEQLQSVEHER-----QILWQAWLRRLD 246 RACE+Q+ MA G + I + A + + V + Q+ W A LR+LD Sbjct: 196 QRACEVQV----MAQSGGAELIHIPGQILAGARDMIAGVMRSKTGMGGQLAWPALLRKLD 251 Query: 247 RLDPSYR 253 + +P YR Sbjct: 252 QQNPGYR 258 >CC1201 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Ccr Caulobacter vibrioides Length = 300 Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/242 (45%), Positives = 144/242 (59%), Gaps = 8/242 (3%) Query: 14 RRDLAAAYRLAALFGWDDTLYTHFSVRLPRADNAAPEEDRFLINPFGLMFDEVRASDLLV 73 R DLAA YRL AL GWDD ++TH S R+P PE FLINP+G+ F E+ AS L+ Sbjct: 66 RVDLAALYRLVALHGWDDMIFTHISARIP-----GPEH-HFLINPYGMFFGEITASSLVK 119 Query: 74 VDLQGRVVSGKSDY-NVAGFTIHSAVHMAREDAHCVLHTHTLPGMAVAACEQGLLQLNQI 132 VDL+G V+ Y N AGFTIHSAVH AREDAH V+H H+ G+AV+A ++GLL L Q Sbjct: 120 VDLEGNVIDKTPYYINPAGFTIHSAVHAAREDAHYVMHLHSDQGVAVSAHKEGLLPLTQH 179 Query: 133 STEFHQRVGVHAYEGVAFDLDERTRIQQSLGNNIALLLRHHGLLSVGATVADAFAIMFYL 192 S ++ H YEG+A +L+ER RI LG L+LR+HG LSVGAT A+ + MF+L Sbjct: 180 SLIVLPQLAYHDYEGIALNLEERERIVADLGQKKLLMLRNHGTLSVGATAAECWLGMFFL 239 Query: 193 NRACEIQMAAAQMATVAGPVTEIAAHLSQHACEQLQSVEHERQILWQAWLRRLDRLDPSY 252 RAC Q+ A + + AA + + + + W LR+LDR P Y Sbjct: 240 ERACAQQVMALSIGRDNVLLAPEAAQ-DEVRKQIGMGMGMIGGLAWPGCLRKLDRESPGY 298 Query: 253 RD 254 D Sbjct: 299 AD 300 >RSc0806 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Rso Ralstonia solanacearum Length = 261 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 144/234 (61%), Gaps = 17/234 (7%) Query: 28 GWDDTLYTHFSVRLPRADNAAPEEDRFLINPFGLMFDEVRASDLLVVDLQGRVVSGKSD- 86 GWDD +YTH S +P E + FLIN FGL FDE+ AS L+ ++ G++V D Sbjct: 38 GWDDLIYTHLSATVPG------EPEHFLINAFGLAFDEITASSLVKINRAGQLVGDWPDP 91 Query: 87 -----YNVAGFTIHSAVHMAREDAHCVLHTHTLPGMAVAACEQGLLQLNQISTEFHQRVG 141 NV GF +H+AVH AR DAHCV+H H G+AV+A + GLL L+Q + FH+R+ Sbjct: 92 AACPSVNVTGFALHAAVHAARPDAHCVIHLHNTAGIAVSAQQHGLLPLSQHALRFHRRLA 151 Query: 142 VHAYEGVAFDLDERTRIQQSLGNNIALLLRHHGLLSVGATVADAFAIMFYLNRACEIQMA 201 H YEG+AF +E R+ SLG + A+LLR+HG L+VG TVA+A +M L +ACEIQ+ Sbjct: 152 YHDYEGLAFTQEEGARLTASLGGHRAMLLRNHGTLTVGRTVAEAHVLMATLIKACEIQI- 210 Query: 202 AAQMATVAGPVTEIAAHLSQHACEQLQSVEH-ERQILWQAWLRRLDRLDPSYRD 254 A AG V A ++ A EQL+ E + W A LR+LDR++ SYRD Sbjct: 211 ---QALTAGAVITPAPRVADRAAEQLEDGGAIEGMLEWPALLRKLDRMNRSYRD 261 >RP493 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Rpr Rickettsia prowazekii Length = 231 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 12/237 (5%) Query: 13 LRRDLAAAYRLAALFGWDDTLYTHFSVRLPRADNAAPEEDRFLINPFGLMFDEVRASDLL 72 ++ +LAAAY++ A DD YTH S R AD + I PFGL F+EV +LL Sbjct: 3 IKYNLAAAYKIMAYLSLDDHTYTHLSARSKNAD-------FYYIYPFGLRFEEVTTENLL 55 Query: 73 VVDLQGRVVSGKS-DYNVAGFTIHSAVHMAREDAHCVLHTHTLPGMAVAACEQGLLQLNQ 131 V L G+++ G+ YN G+ IH ++ AR D + H HT AV+A + GLL ++Q Sbjct: 56 KVSLDGKILEGEEYQYNKTGYFIHGNIYKARPDVLAIFHYHTPASTAVSALKCGLLPISQ 115 Query: 132 ISTEFHQRVGVHAYEGVAFDLDER-TRIQQSLGNNIALLLRHHGLLSVGATVADAFAIMF 190 + F+ R+ H Y + D D++ T+ L N +LLR+HG ++ G T+ +A + Sbjct: 116 WALHFYDRISYHDYNSLVLDADKQSTKFVNDLKQNYVMLLRNHGAITCGKTIHEAMFYTY 175 Query: 191 YLNRACEIQMAAAQMATVAGPVTEIAAHLSQHACEQLQSVEHE-RQILWQAWLRRLD 246 +L +AC+ Q +T+ + + + + + L S E + + W+AWLR ++ Sbjct: 176 HLEQACKTQCLLN--STIQQELIIPSVEICKKTVKDLLSFEEDLGKRDWEAWLRLIN 230 >RC0678 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Rco Rickettsia conorii Length = 231 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 128/236 (54%), Gaps = 16/236 (6%) Query: 13 LRRDLAAAYRLAALFGWDDTLYTHFSVRLPRADNAAPEEDRFLINPFGLMFDEVRASDLL 72 ++ +LAAAYR+ A DD YTH S R P+ NA + I PFGL F+EV +LL Sbjct: 3 IKYNLAAAYRIMAYLSLDDHTYTHLSAR-PK--NAV----FYYIYPFGLRFEEVTTENLL 55 Query: 73 VVDLQGRVVSGKS-DYNVAGFTIHSAVHMAREDAHCVLHTHTLPGMAVAACEQGLLQLNQ 131 V L G+++ G+ YN G+ IH +++ R D + H HT +AV+A + GLL ++Q Sbjct: 56 KVSLDGQILEGEEYQYNKTGYFIHGSIYKTRPDISAIFHYHTPAAIAVSALKCGLLPISQ 115 Query: 132 ISTEFHQRVGVHAYEGVAFDLDER-TRIQQSLGNNIALLLRHHGLLSVGATVADAFAIMF 190 + F+ R+ H Y + D D++ +R+ L N +LLR+HG ++ G T+ +A + Sbjct: 116 WALHFYDRISYHNYNSLVLDADKQSSRLVTDLKQNYVMLLRNHGAITCGKTIHEAMFYTY 175 Query: 191 YLNRACEIQ--MAAAQMATVAGPVTEIAAHLSQHACEQLQSVEHE-RQILWQAWLR 243 +L +AC+ Q + + + + P EI + + L S E + + W AWLR Sbjct: 176 HLEQACKTQCLLNSTKEQELIIPSVEIC----KQTVKDLLSFEEDLGKRDWAAWLR 227