BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0071.p (276 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0034 [T] COG1639 Predicted signal transduction protein Vch Vi... 152 9e-37 TM0854 [T] COG1639 Predicted signal transduction protein Tma The... 99 1e-20 PA5346_2 [T] COG1639 Predicted signal transduction protein Pae P... 75 1e-13 PA0356 [T] COG1639 Predicted signal transduction protein Pae Pse... 70 4e-12 TP0073 Non COG 69 1e-11 >VCA0034 [T] COG1639 Predicted signal transduction protein Vch Vibrio cholerae Length = 290 Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 136/226 (60%), Gaps = 8/226 (3%) Query: 1 MNL--EALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSS 58 MN+ + + LP + KV+QE+++ N V +++KK+ DQ+L+A++LR+ANS+ Sbjct: 13 MNMVKNTMLNRLNELPRLSKVLQELLDMANQPDVDFHQLSKKITLDQILTARLLRMANSA 72 Query: 59 YYHVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKW 118 Y+ + I TV+DA++ +G +VRTLVV++ ++ +F K+ +DL +W + +TA++A Sbjct: 73 YFGGNGHIATVNDAIIRVGIESVRTLVVASVLSSTFPKIETLDLNDYWTNTFETALIASK 132 Query: 119 LAKQKQVKLNSDFAFTVGLMHAIGQLVMHAGMP-EQALEVDKVAGPLDARRLDVERQSFG 177 +A +QV L+ FT G++H IG+L++H MP E +L K+A +D L + + G Sbjct: 133 IA--EQVGLDKSETFTTGVLHNIGELMIHTLMPTEASLIQQKIAQGMDP--LSAQEEVLG 188 Query: 178 YDFADVGAELARRWRFPDEFAKVIKAFPQPLKGEFDP-FAAVVHLA 222 +GA LA+ W+FP E IK F +P + E P A +H A Sbjct: 189 ISAPRIGAMLAKEWKFPSEMVDAIKHFDEPREAEISPKLAVAIHFA 234 >TM0854 [T] COG1639 Predicted signal transduction protein Tma Thermotoga maritima Length = 285 Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 11/205 (5%) Query: 13 LPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTIGTVDDA 72 LPS VVQ +I + S E+A L D LSA++L+LANS+YY V R I T+ +A Sbjct: 16 LPSPNVVVQRIIAVCSKPDASSTEVANTLMMDASLSARVLKLANSAYYGVPRKITTLSEA 75 Query: 73 VLMLGFMTVRTLVVSTGMAGS-FKK-LPGVDLKLFWRYSLDTAIVAKWLAKQKQVKLNSD 130 V++LGF TVR L +S FK G+D + W + + +AI ++ +A+ L + Sbjct: 76 VMILGFKTVRNLALSVFTYDMVFKNSSSGIDREKLWEHFIASAIASETVAETMGYPLKEE 135 Query: 131 FAFTVGLMHAIGQLVMHAGMPEQALEVD-KVAGPLDARRLDVERQSFGYDFADVGAELAR 189 F GL+H +G++V + + LE + K+A +D+E + ++VGA+L R Sbjct: 136 I-FIAGLLHDLGKVV-YDLLFSDILETEAKIAQKTKKNLIDIEEELGIPPHSEVGAKLLR 193 Query: 190 RWRFPD------EFAKVIKAFPQPL 208 +W FPD EF ++ P L Sbjct: 194 KWNFPDLLVLSAEFHHNVEGNPNEL 218 >PA5346_2 [T] COG1639 Predicted signal transduction protein Pae Pseudomonas aeruginosa Length = 293 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 18/262 (6%) Query: 3 LEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHV 62 ++ +Q +P +P+ Q++I+ + + S+++I + D L+A+++ A S YY Sbjct: 9 IQQRLEQTIEIPPLPQTAQKIIKLRVDPNASVDDITGLVETDPALAAQVVSWAASPYYAA 68 Query: 63 SRTIGTVDDAVL-MLGFMTVRTLV--VSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWL 119 I +V+DA++ +LGF V L ++ G + S K +W+ ++ TA V + L Sbjct: 69 PGKIRSVEDAIVRVLGFDLVINLALGLALGKSLSLPKDQPQQATPYWQQAIYTAAVIEGL 128 Query: 120 AK--QKQVKLNSDFAFTVGLMHAIGQLVM------HAGMPEQALEVDKVAGPLDARRLDV 171 + ++++ S ++ GL+H G LV+ H + + LEV+ G + Sbjct: 129 TRAMPRELRPESGLSYLGGLLHNFGYLVLAHVFPPHFSLICRHLEVNPHLG-----HAYI 183 Query: 172 ERQSFGYDFADVGAELARRWRFPDEFAKVIKAFPQPLKGEFDPFAAVVHLAAWRARAEEN 231 E+ G +GA L R W PD+ ++ P P A +L R N Sbjct: 184 EQHLLGITREQIGAWLMRVWDMPDDLYCALRFQQDP--SYTGPNAVYANLICLTNRLLRN 241 Query: 232 KYSADELESTFPAEVAAKLGLS 253 D + PA + +LG++ Sbjct: 242 SGIGDGTQQAIPAALYERLGIT 263 >PA0356 [T] COG1639 Predicted signal transduction protein Pae Pseudomonas aeruginosa Length = 274 Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 3/170 (1%) Query: 34 IEEIAKKLAADQVLSAKILRLANSSYYHVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGS 93 ++ IA+ ++ D LS +L+L NS ++ ++ I ++ AV +LG +V L+ + + G Sbjct: 22 LKNIARLISQDPGLSGALLKLVNSPFFGLANRITSIQRAVNLLGSRSVINLINAQSIKGE 81 Query: 94 FKKLPGVDLKLFWRYSLDTAIVAKWLAKQKQVKLNSDFAFTVGLMHAIGQLVMHAGMPE- 152 V L FW + D A+ LAK+ + + D A+ +GL H G +M P Sbjct: 82 MSDDTIVTLNRFWDTAQDVAMSCLSLAKRIGYE-SVDEAYALGLFHNCGIPLMLKRFPHY 140 Query: 153 QALEVDKVAGPLDARR-LDVERQSFGYDFADVGAELARRWRFPDEFAKVI 201 A+ + A D RR +D E + + A VG AR WR P+ + I Sbjct: 141 MAVLEEAYAAASDERRVVDTENRVLNTNHAVVGYYTARSWRLPEHVCEAI 190 >TP0073 Non COG Length = 513 Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 13 LPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTIGTVDDA 72 +P +P + E+ + N V + +I ++ D L +L+L NS+ + +++ + +A Sbjct: 254 IPQLPSKLLEIQRAIENPDVQLSDIVALISQDVALVTDLLKLVNSARFGMNKRCLDISEA 313 Query: 73 VLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWLAKQKQVKLNSDFA 132 V +G ++ L+ S G AG + + K W + T A LAK + + Sbjct: 314 VKRVGLRGLQNLLYSVG-AGRVLQSTDDERKQLWNQAYRTGYFALGLAKATGDQALIADS 372 Query: 133 FTVGLMHAIGQLVMHAGMPEQALEVDKVAGP--LDARRLDVERQSFGYDFADVGAELARR 190 + GL+H +G++V + PE +++ ++ + LD G+ A++GA LA+R Sbjct: 373 YICGLLHNLGEVVFTSAYPEMLIKLTEIQAERNIPPHVLDTIMSDVGH--AEIGAALAQR 430 Query: 191 WRFPDEFAKVIKAFPQPLKG---EFDPFAAVVHLAAWRAR 227 W P+ I+ F L E+ P + V A R Sbjct: 431 WNLPEPVINTIR-FHHNLPHAPEEYKPLISTVAFANMTIR 469