BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0049.p         (120 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1221 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...   166   8e-42
nirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and r...    92   3e-19
ZnirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and ...    92   3e-19
ECs4217 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...    92   3e-19
Rv0253 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    91   5e-19

>RSp1221 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Rso Ralstonia
           solanacearum
          Length = 113

 Score =  166 bits (421), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 92/114 (80%), Gaps = 4/114 (3%)

Query: 5   QQIKHWTPVCELAEIVPNTGVAALIGDQQVAIFHVIDRSQGEPQPRVFAIGNYDPNAQAA 64
            Q  HWT +C L +IVPNTGV AL+G  Q+A+FHV     G+   RV+AIGNYDPNA AA
Sbjct: 1   MQANHWTAICALDDIVPNTGVCALVGGAQIAVFHV----AGDAPRRVYAIGNYDPNADAA 56

Query: 65  VLSRGLVGNLGERIVVASPIYKHHFDLTTGQCLEEPANSVPAWPARIDEGKVWI 118
           VLSRGLVGNLGERIVVASPIYK HFDL TG+CLE PANSVPA+ A++++GKVWI
Sbjct: 57  VLSRGLVGNLGERIVVASPIYKQHFDLATGECLEAPANSVPAYAAKVEDGKVWI 110


>nirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Eco Escherichia coli K12
          Length = 108

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 7   IKHWTPVCELAEIVPNTGVAALIGDQQVAIFHVIDRSQGEPQPRVFAIGNYDPNAQAAVL 66
           +  W  +C++ +I+P TGV AL+GD+QVAIF      Q      VFAI N DP  +++VL
Sbjct: 1   MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQ------VFAISNIDPFFESSVL 54

Query: 67  SRGLVGNLGERIVVASPIYKHHFDLTTGQCLEEPANSVPAWPARIDEGKVWIGG 120
           SRGL+      + VASP+ K  F L+ G C+E+   SV  + AR+ +G V + G
Sbjct: 55  SRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRG 108


>ZnirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases EcZ Escherichia coli
           O157:H7 EDL933
          Length = 108

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 7   IKHWTPVCELAEIVPNTGVAALIGDQQVAIFHVIDRSQGEPQPRVFAIGNYDPNAQAAVL 66
           +  W  +C++ +I+P TGV AL+GD+QVAIF      Q      VFAI N DP  +++VL
Sbjct: 1   MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQ------VFAISNIDPFFESSVL 54

Query: 67  SRGLVGNLGERIVVASPIYKHHFDLTTGQCLEEPANSVPAWPARIDEGKVWIGG 120
           SRGL+      + VASP+ K  F L+ G C+E+   SV  + AR+ +G V + G
Sbjct: 55  SRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRG 108


>ECs4217 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Ecs Escherichia coli
           O157:H7
          Length = 108

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 7   IKHWTPVCELAEIVPNTGVAALIGDQQVAIFHVIDRSQGEPQPRVFAIGNYDPNAQAAVL 66
           +  W  +C++ +I+P TGV AL+GD+QVAIF      Q      VFAI N DP  +++VL
Sbjct: 1   MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQ------VFAISNIDPFFESSVL 54

Query: 67  SRGLVGNLGERIVVASPIYKHHFDLTTGQCLEEPANSVPAWPARIDEGKVWIGG 120
           SRGL+      + VASP+ K  F L+ G C+E+   SV  + AR+ +G V + G
Sbjct: 55  SRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRG 108


>Rv0253 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 118

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 9/116 (7%)

Query: 5   QQIKHWTPVCELAEIVPNTGVAALIGD-QQVAIFHVIDRSQGEPQPRVFAIGNYDPNAQA 63
             I+ WT  C    ++P  GV  L+ D  QVA+F + D S       V A+GN DP + A
Sbjct: 5   NDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGS-------VHAVGNVDPFSGA 57

Query: 64  AVLSRGLVGNLGERIVVASPIYKHHFDLTTGQCLEEPANSVPAWPARID-EGKVWI 118
           AV+SRG+VG+ G R +V SPI K  F L  G CL++P  SVP +PAR+  EG++ +
Sbjct: 58  AVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113