BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0027.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3214 [R] COG3218 ABC-type uncharacterized transport system, au... 167 1e-41 XF1300 [R] COG3218 ABC-type uncharacterized transport system, au... 81 1e-15 mll0797 [R] COG3218 ABC-type uncharacterized transport system, a... 68 1e-11 SMc00177 [R] COG3218 ABC-type uncharacterized transport system, ... 61 2e-09 CC2321 Non COG 59 9e-09 >PA3214 [R] COG3218 ABC-type uncharacterized transport system, auxiliary component Pae Pseudomonas aeruginosa Length = 214 Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/176 (52%), Positives = 114/176 (64%) Query: 20 CSILPKSDPLAVYRLPPLASPHAASTGTPYRALRIATPAASRSIDSERILVLPEGDVVKS 79 CSILP++ L VY LP P +A+ +LRIA P S ++S RI V P GD + Sbjct: 26 CSILPEAQVLQVYLLPVHNPPASAAARPVDWSLRIARPRTSLVLESPRIAVRPHGDEISV 85 Query: 80 YAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAEVELDGALNAFQTEYRNGAP 139 Y G RWSDPAP LLRDRL+ AFQADGR LS D++N+ A+ EL G L AFQTEY NG Sbjct: 86 YQGARWSDPAPSLLRDRLMQAFQADGRVRGLSSDDSNLQADFELGGDLRAFQTEYPNGQA 145 Query: 140 SVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVVSAFGSASARLANEVVAW 195 S +I YDARLV T ++ +A+RRF V + V G KV VVSAFG A L+ +V+ W Sbjct: 146 SALIRYDARLVRTDDKRVVASRRFEVSQPVDGKKVAAVVSAFGKAGDTLSAQVLDW 201 >XF1300 [R] COG3218 ABC-type uncharacterized transport system, auxiliary component Xfa Xylella fastidiosa 9a5c Length = 213 Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 14/203 (6%) Query: 5 LLRTALVTASLALTACS--ILPKSDPLAVYRLPPLASPHAASTGTP-----YRALRIATP 57 L+ + + L L +CS +L + P +Y SP T P L + P Sbjct: 3 LIHPLVCLSVLTLASCSSTLLGEKKPTTIY------SPQIHVTTDPSWPRVTWHLTVLHP 56 Query: 58 AASRSIDSERILVLPEGDVVKSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANI 117 A R ID+ RI V P ++ Y V W+ P +L D L+ F+ G+ ++ I Sbjct: 57 KAPRMIDTPRINVQPTPGEIQVYRNVSWAQPTTDMLEDALIRVFEDSGKIAGVTRAGTGI 116 Query: 118 AAEVELDGALNAFQTEYRNG-APSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPE 176 + L L F+++Y P+ I +A+L+ ++ +A+R F V + + Sbjct: 117 RTDYSLSLDLRRFESDYAGTPMPTATIEVNAKLIGAHNKRLIASRTFIVTQPATNTDTST 176 Query: 177 VVSAFGSASARLANEVVAWAATV 199 V +AFG A +L NE+V W T+ Sbjct: 177 VANAFGQALTQLTNELVGWTLTM 199 >mll0797 [R] COG3218 ABC-type uncharacterized transport system, auxiliary component Mlo Mesorhizobium loti Length = 197 Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 5/182 (2%) Query: 19 ACSILP-KSDPLAVYRLPPLASPHAASTGTPYRALRIATPAASRSIDSERILVLPEGDVV 77 C++L K PL + L ++P + G + + IA P+A +++DS+ I++ P + Sbjct: 19 GCAVLGGKPAPLDTFEL---SAPSVDAHGHSRKQILIAQPSALKALDSQNIVIKPSDRSI 75 Query: 78 KSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAEVELDGALNAFQTEYRNG 137 + G +W+D P +++ RL + FQ G F + +A + ++ + +F+ G Sbjct: 76 QYLKGAQWADRLPLIVQARLAETFQRSGSFAGVGKPGEGLAIDYQVIVEIRSFEVSVDGG 135 Query: 138 APSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVVSAFGSASARLANEVVAWAA 197 + V ++ RL++ + A++ F V+GS P + A SA A ++V W Sbjct: 136 EHAEVDLF-VRLLNDRNGEVRASKSFTASAPVSGSGNPAYIKALDSAFGDAAKQIVRWTD 194 Query: 198 TV 199 +V Sbjct: 195 SV 196 >SMc00177 [R] COG3218 ABC-type uncharacterized transport system, auxiliary component Sme Sinorhizobium meliloti Length = 204 Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 9/191 (4%) Query: 7 RTALVTASLA-LTAC-SILPKSDPLAVYRLPPLASPHAASTGTPYRALRIATPAASRSID 64 R+A+V A A L C S +D ++ +P + P G R L + P A +++ Sbjct: 16 RSAVVLALAAILAGCGSRQAANDTFSLASVPAVERP-----GATNRQLLVPEPTALKTLG 70 Query: 65 SERILVLPEGDVVKSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAEVELD 124 S++I+V ++ A +W D P++++DRL+ F GR R+ +A + +L Sbjct: 71 SDQIVVRLSRSELQYLARAQWGDSLPRMVQDRLVQTFDNTGRI-RVGKPGQGLAIDYQLI 129 Query: 125 GALNAFQTEYRNGAPSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVVSAFGSA 184 L AF+ A +VV ++ A+++D + F V V G+ P V+A +A Sbjct: 130 TELRAFEISTDGAATAVVEIF-AKILDDRNGTVRKQQAFRAVVPVRGAGNPAFVAALDAA 188 Query: 185 SARLANEVVAW 195 AR+A ++V W Sbjct: 189 FARVAADIVGW 199 >CC2321 Non COG Length = 216 Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 9/188 (4%) Query: 14 SLALTAC-SILPKSDPLAVYRLPP--LASPHAASTGTPYRALRIATPAASRSIDSERILV 70 +L+L+AC S+ P+S+P +YR + P G + L+ T +R+ +R+L Sbjct: 22 ALSLSACISVFPESEPATLYRFGQADVGVPKGPK-GAVFSVLKAPT-TFTRASAGDRLLT 79 Query: 71 LPEGDVVKSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAEVELDGALNAF 130 G+V A RW PA L + + AFQ D RL G A++ L + F Sbjct: 80 STRGEVA-YIADARWVSPAFVLFEEAVASAFQTDQGRARLIGRGEIAKADLVLRLEVQTF 138 Query: 131 QTEYRNG---APSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVVSAFGSASAR 187 + +Y NG AP VV+ L R ++ + F ++V +V A+ A A+ Sbjct: 139 EAQYVNGPKSAPEVVVRVRGVLNRNQDRTLVSDQVFEARVKADDNRVSAIVPAYDQAVAQ 198 Query: 188 LANEVVAW 195 + EVV W Sbjct: 199 VLGEVVTW 206