BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0009.p         (236 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0290 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...   164   1e-40
PA4144 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...    88   2e-17

>RSp0290 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 488

 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/205 (48%), Positives = 134/205 (65%), Gaps = 4/205 (1%)

Query: 18  DPLLARPPELDKGKILPGDDRPTGCATSPFTPGKVLTLVDAVDLALCHQPQVQASWAAIK 77
           DPL ARPP LD G +LP D +P  C  S       L+L +AVDL LC+ PQV+A+WAAIK
Sbjct: 41  DPLFARPPVLDTGAVLPSDAQPIPCPASG-DLAHPLSLSEAVDLGLCNNPQVKAAWAAIK 99

Query: 78  LQSSQLGEARAAYLPTL-GAGVGQYRESATSD--QGSSKRSIGTLYATLTWRLLDFGGRS 134
           +Q+  +GEARAAYLPTL G+    +  +   D  + +S  +  T+Y  L+WRL DFG RS
Sbjct: 100 IQAGAVGEARAAYLPTLTGSLSAMHTRNEFPDRPEANSTSNGHTVYLGLSWRLFDFGARS 159

Query: 135 ANQRAADVLLQAASASQDATLQKAMGNAVGLYYDAHSARAAQQSRERSLALARQILEAAI 194
           AN+ AA++LL AA +  DA LQK + + VG Y+DA + +AA Q+R  +  LAR  +EA  
Sbjct: 160 ANREAANLLLAAAISGHDAALQKVLASVVGAYFDALTQQAAMQARTEATRLARDTVEATE 219

Query: 195 KREQRGVGALPETLQARTFVARAEL 219
           +RE+RG     +TLQART  A+A+L
Sbjct: 220 RRERRGAAGQSDTLQARTAFAKAQL 244


>PA4144 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 471

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 108/204 (52%), Gaps = 27/204 (13%)

Query: 42  CATSPFTPGKVLTLVDAVDLALCHQPQVQASWAAIKLQSSQLGEARAAYLPTL------- 94
           C   P  P   L+L +A++  LCH PQ + +WA  K Q++Q+G  ++AYLP L       
Sbjct: 47  CRGGP--PPTELSLEEAIERILCHDPQTRLAWANAKAQAAQVGIGKSAYLPRLDGRLDAS 104

Query: 95  -GAGVGQYRES-ATSDQGSSKRSIGTLYATLTWRLLDFGGRSANQRAADVLLQAASASQD 152
            G     YR++   S  G   R   +L   L+W L DFG RSA  R A  LL AA+ASQD
Sbjct: 105 RGYSDMDYRDAPYLSGDGHRHRRGASL--QLSWVLFDFGRRSAALRNAQQLLLAANASQD 162

Query: 153 ATLQKAMGNAVGLYYDAHSARAAQQSRERSLALARQI-------LEAAIKREQRGVGALP 205
           ATLQ     A   YYDA +A       +RSLA +RQ+       LEAA  + + G  AL 
Sbjct: 163 ATLQNTFALAAQAYYDALAA-------QRSLAASRQVAELAAQNLEAADAKYRAGAAALS 215

Query: 206 ETLQARTFVARAELELXVETHALS 229
           + LQA+T +++A L    +  ALS
Sbjct: 216 DRLQAQTALSQASLAQVRDEGALS 239