BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0181.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0916 [L] COG1555 DNA uptake protein and related DNA-binding p...    79   2e-15

>RSc0916 [L] COG1555 DNA uptake protein and related DNA-binding proteins Rso
           Ralstonia solanacearum
          Length = 105

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 4/106 (3%)

Query: 1   MLKKTLLFILSFFAATALAWAEVDVNKADQAALDGVRGIGPSMSKRILEERQKGGAFKDW 60
           MLKK L   L   +A + +WA VDVN ADQ+AL+ + G+GP  SK I+EER K G +KD 
Sbjct: 1   MLKKLLAAALMCLSALSASWAAVDVNTADQSALETLSGVGPKRSKAIVEERAKNGPYKDA 60

Query: 61  ADLEKRVKGIKDKAAVKLSANGLTVNGQAKTGAA-APAAKEGKASR 105
           AD   RV GI +K+  KL   GL      K GA   PA K+ + +R
Sbjct: 61  ADFMARVPGIGEKSLAKLQNEGLAFG---KGGAVPTPARKDARDAR 103