BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0171.p (220 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium... 151 1e-36 AGl391 [K] COG1609 Transcriptional regulators Atu Agrobacterium ... 145 6e-35 STM3696 [K] COG1609 Transcriptional regulators Sty Salmonella ty... 138 8e-33 RSp1616 [K] COG1609 Transcriptional regulators Rso Ralstonia sol... 136 3e-32 PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella mu... 132 8e-31 >mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium loti Length = 344 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 108/194 (55%) Query: 10 RSRRGTNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGS 69 RSRRG R T+ DVA +A V A +VS LR PE VS L +I+ A+D LGYVP+ A + Sbjct: 7 RSRRGGGRPTIADVARKAGVGAITVSRALREPERVSEELRRQIQAAVDELGYVPDPNARA 66 Query: 70 LAAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLS 129 LA+AR GV+VPSL N F E V + +++ LG T Y E L++ F S Sbjct: 67 LASARAEVFGVLVPSLTNNVFAEVVRGIYDSLSDSPFRIQLGNTHYSGLEEERLLQLFGS 126 Query: 130 WSPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQ 189 P AL+V G +R LL A PV ++ E G +P + VGFSH G HL + Sbjct: 127 QRPAALIVAGIDQTPTSRKLLENAGCPVVQVMETGPDPVDMMVGFSHFDGGRTATEHLIE 186 Query: 190 QGATRIAFVGARMD 203 G RI F+GARMD Sbjct: 187 AGYRRIGFIGARMD 200 >AGl391 [K] COG1609 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 352 Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 15 TNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAAAR 74 + + TM DV+ A VS +VS L +P VS ++ +AI+ LGYVP+++AGSL++ R Sbjct: 8 SKKATMSDVSKLAGVSKMTVSRVLADPALVSEDTRQKVMKAIEKLGYVPDRIAGSLSSRR 67 Query: 75 TRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTA 134 T I I+P+L N+ F ++ L DYQLL+G T YDL E ++RT + P A Sbjct: 68 TNFITAILPTLTNSNFADSAQGLANALRAADYQLLIGYTMYDLLEEERVIRTMMERRPDA 127 Query: 135 LVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQQGATR 194 +VV G H + +L A P+ E+W++ E P VGFS+ VG A HL G T+ Sbjct: 128 IVVAGTVHTKMASEVLMRAGIPIVEIWDVPEHPIDHAVGFSNYEVGRTAAKHLISLGFTK 187 Query: 195 IAFVGARMDADRDFARHWHG 214 I +G+R D D + W G Sbjct: 188 IGALGSRADGD---VKDWRG 204 >STM3696 [K] COG1609 Transcriptional regulators Sty Salmonella typhimurium LT2 Length = 334 Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 3/199 (1%) Query: 19 TMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAAARTRAI 78 T+EDVA A +S +VS L +P+ V P+ ++ +A+ GY+PN LAG LA+ R++ I Sbjct: 11 TLEDVARSAGLSPMTVSRALNSPQLVRPKTVEKVMQAVRVTGYIPNALAGGLASRRSKLI 70 Query: 79 GVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVVT 138 V+VP + N F +T+ +L E R Y +LL Y + E ELV T LS P +V+T Sbjct: 71 AVVVPQINNNMFVDTIQSLSDELARRGYHILLCVAGYTEQTEAELVATLLSRRPDGVVLT 130 Query: 139 GCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQQGATRIAFV 198 G HH + ++ A PV E+W++ P + VGFSH VG+ +L +G R Sbjct: 131 GIHHTIELKKVILNAAIPVVEIWDLTPTPLDMLVGFSHEKVGQATGEYLLSKGYRR---P 187 Query: 199 GARMDADRDFARHWHGMAS 217 G ADR A+ G+ S Sbjct: 188 GLLWTADRRAAQRKQGLCS 206 >RSp1616 [K] COG1609 Transcriptional regulators Rso Ralstonia solanacearum Length = 350 Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/191 (39%), Positives = 110/191 (57%) Query: 8 AARSRRGTNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLA 67 A R+R+ T R+T+ D+A V+ +VS L PE VS R++ A+ GY P+ +A Sbjct: 17 ARRARKSTGRITLSDLARLVGVTKVTVSRALNTPELVSADTLGRVREAVRQTGYTPDLVA 76 Query: 68 GSLAAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTF 127 GSLA+ R+R I ++P++ + F ET+AAL E YQLL+G + YD RE L+ Sbjct: 77 GSLASNRSRLIVALIPTIAGSVFQETIAALTTELAAAGYQLLIGQSGYDESREDALLDAI 136 Query: 128 LSWSPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHL 187 + P +V+TG H+ + R L+ A PV E W+I P + VGFSH VG+ A +L Sbjct: 137 VGRRPAGIVLTGVAHSASVRQKLQAAGVPVVETWDITRTPLDMLVGFSHQKVGQAAARYL 196 Query: 188 HQQGATRIAFV 198 Q+GA R A + Sbjct: 197 KQRGAQRPAVI 207 >PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella multocida Length = 332 Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 108/188 (57%) Query: 16 NRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAAART 75 R T++D+A ++ ++S YLR+P++V+P +I +AI+ GY+PN+ L+ A++ Sbjct: 5 KRPTLQDIATHLGITKMTISRYLRHPDSVAPETQAKIAQAIEHFGYIPNRAPDILSNAKS 64 Query: 76 RAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTAL 135 RAIGV+VPSL N F + + ++ D+ YQ +L Y +E+E + + + LS+ L Sbjct: 65 RAIGVLVPSLTNQVFADVIKGIELVSDKAGYQTMLAHYGYSMEKEEQRIESLLSYHVDGL 124 Query: 136 VVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQQGATRI 195 +++ H+E T +L +A+ PV E+ E E +GF ++A + M + +G + Sbjct: 125 ILSENQHSERTLKMLEVANIPVVEIMECSEVGIQQAIGFDNIAAAQAMVETMIHRGHKNV 184 Query: 196 AFVGARMD 203 + ARMD Sbjct: 185 VYFSARMD 192