BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0148.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO3877 [NU] COG3539 P pilus assembly protein, pilin FimA Ype Ye...   137   2e-32
YPO1922 [NU] COG3539 P pilus assembly protein, pilin FimA Ype Ye...   133   2e-31
STM0340 [NU] COG3539 P pilus assembly protein, pilin FimA Sty Sa...   131   7e-31
PA2128 [NU] COG3539 P pilus assembly protein, pilin FimA Pae Pse...   108   6e-24
Z1538 [NU] COG3539 P pilus assembly protein, pilin FimA EcZ Esch...   107   1e-23

>YPO3877 [NU] COG3539 P pilus assembly protein, pilin FimA Ype Yersinia
           pestis
          Length = 176

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 116/182 (63%), Gaps = 13/182 (7%)

Query: 1   MKK-HLAILLLVSPSVVL--AAGSTINFRGQVNSQTCQVMVDG-AANPVVLLPTVATGDL 56
           MKK  LAI L  + + V   A+ +TI F+G+V +QTC V V+G  ANPVVLLPTV++ DL
Sbjct: 1   MKKITLAIALFSASTTVAMSASNNTITFQGEVTAQTCSVTVNGLEANPVVLLPTVSSSDL 60

Query: 57  AATGASAGETPFVVSVSGCTASATDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKS 116
            A+G + G+T F + VSGCT S +D L IKT F+ S  T+  N+ N G+A NV LQL K 
Sbjct: 61  DASGQTKGKTTFTLGVSGCT-SGSDDLDIKTVFIGSLVTATGNLQNTGTAGNVELQLLK- 118

Query: 117 VGGDPISLVG---GSGVSVEGLEIAAGSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALD 173
              D  +  G    SG++ +G+ + AG TSA H FAV+Y A  G +  GSVI SVQYA+ 
Sbjct: 119 ---DATTTTGIDLNSGLAQDGIVLLAGDTSAEHDFAVQYYAT-GQSTPGSVIASVQYAVS 174

Query: 174 YF 175
           Y 
Sbjct: 175 YL 176


>YPO1922 [NU] COG3539 P pilus assembly protein, pilin FimA Ype Yersinia
           pestis
          Length = 176

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 113/178 (63%), Gaps = 7/178 (3%)

Query: 1   MKKHLAILLL-VSPSVVLA--AGSTINFRGQVNSQTCQVMVDGAAN-PVVLLPTVATGDL 56
           MKK L  L+L + P +  A  + +TI F+G+V  QTC V ++G AN PVVLLPTV+T +L
Sbjct: 1   MKKTLVTLMLFILPGIAFAETSNNTIKFQGEVAEQTCMVDINGTANTPVVLLPTVSTSNL 60

Query: 57  AATGASAGETPFVVSVSGCTASATDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKS 116
               + AG+T F ++++GC  +  D  +I + F     TSG N+ N+G+A+NVA+QL   
Sbjct: 61  NQVNSVAGKTNFTINLTGCNIAIQDT-QISSVFQGMNVTSGGNLGNIGTARNVAIQLIDP 119

Query: 117 VGGDPISLVGGSGVSVEGLEIAAGSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDY 174
             G PI + GGS V V G+ +A G+TSAS   + +Y+ E G A AGSVI S QYA+ Y
Sbjct: 120 -RGTPIRMSGGS-VEVPGITLATGATSASQDLSAQYITEEGQATAGSVIASAQYAITY 175


>STM0340 [NU] COG3539 P pilus assembly protein, pilin FimA Sty Salmonella
           typhimurium LT2
          Length = 178

 Score =  131 bits (329), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 116/179 (64%), Gaps = 9/179 (5%)

Query: 1   MKKHLAIL---LLVSPSVVLAAGSTINFRGQVNSQTCQVMVDG-AANPVVLLPTVATGDL 56
           MKK+LA++   LLVS S +  + +TI F+G+V+ +TC V+++G  A PVVLLPTV+T DL
Sbjct: 3   MKKYLAMITGSLLVSSSAMAVSDNTITFQGEVSDETCSVVINGNQAKPVVLLPTVSTKDL 62

Query: 57  AATGASAGETPFVVSVSGCTASATDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKS 116
           +  G +AG   F + +SGCT S     KI T F+ +  TS  N+ N GSAKNV +QL  +
Sbjct: 63  SEQGKTAGPITFDIGLSGCTGSQDKTTKISTVFVGNQVTSNGNLGNTGSAKNVEVQLLDT 122

Query: 117 VGGDPISLVGGSGVSVEG-LEIAAGSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDY 174
             G+PI+L G  G + +G L++   ++ AS T+  RY +  G AEAG+V  ++QYA+ Y
Sbjct: 123 -SGEPINLTG--GFTGDGDLQLEPNASEASATYTARYYST-GKAEAGTVAATLQYAVSY 177


>PA2128 [NU] COG3539 P pilus assembly protein, pilin FimA Pae Pseudomonas
           aeruginosa
          Length = 183

 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 4/159 (2%)

Query: 19  AGSTINFRGQVNSQTCQVMVDGAANPVVLLPTVATGDL-AATGASAGETPFVVSVSGCTA 77
           A +TI F G+V  QTCQV V+G  +P V+L +V    L  A G SAGET F + ++ C A
Sbjct: 25  AANTITFSGEVTDQTCQVAVNGFTDPTVILDSVPVSALDGAVGRSAGETAFTLQLTDCVA 84

Query: 78  SATDKLKIKTQFLASAATSGNNIPNLGS--AKNVALQLRKSVGGDPISLVGGSGVSVEGL 135
              D+    T F A+  ++  N+ N  +  A  VALQL  SVGG+P+ L GG+ V    +
Sbjct: 85  PTADE-HFTTLFQATNPSAAGNLVNTAASGATGVALQLLDSVGGNPVDLAGGAAVPAGDI 143

Query: 136 EIAAGSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDY 174
            +A G+TS S+ +AV+YV+E      G V+G V Y L Y
Sbjct: 144 VLANGATSTSYDYAVQYVSEAATVTPGPVLGVVTYTLRY 182


>Z1538 [NU] COG3539 P pilus assembly protein, pilin FimA EcZ Escherichia
           coli O157:H7 EDL933
          Length = 186

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 96/184 (52%), Gaps = 13/184 (7%)

Query: 1   MKKHLAILLLVSPSVVLAAGSTINFRGQVNSQTCQVMVDGAANPVVLLPTVATGDLAAT- 59
            KK   +  +  P   +AA  T+ F+G+V  QTC V ++G  N VVL+PTVA  D  AT 
Sbjct: 5   FKKAALLAAIALPFSTMAA-PTVTFQGEVTDQTCSVNINGQTNSVVLMPTVAMADFGATL 63

Query: 60  --GASAGETPFVVSVSGCTASATDKLKIKTQFL-----ASAATSGNNIPNLGSAKNVALQ 112
             G SAG+TPF VSVS C A       I T FL     AS    GN   +  +AK   +Q
Sbjct: 64  ADGQSAGQTPFTVSVSNCQAPTGADQAINTTFLGYDVDASTGVMGNRDTSSDAAKGFGIQ 123

Query: 113 LRK-SVGGDPISLVGGSGVSVEGLEIAAGSTSASHTFAVRY-VAEGGAAEAGSVIGSVQY 170
           L   S  G+P++L G +  +V GL +  G T AS+ F  RY V +  AA AG +    +Y
Sbjct: 124 LMDSSTSGNPVTLAGAT--NVPGLTLKVGDTEASYDFGARYFVIDSAAATAGKITAVAEY 181

Query: 171 ALDY 174
            L Y
Sbjct: 182 TLSY 185