BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0147.p (234 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3878 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 161 1e-39 YPO1921 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 154 2e-37 YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 150 2e-36 PA2129 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae... 143 3e-34 ECs1279 [NU] COG3121 P pilus assembly protein, chaperone PapD Ec... 138 1e-32 >YPO3878 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 243 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 2 LLVFLLSAHASASVTMLGTRVIYPADAGEQVLRFSNPDDHPNLVQLWLDDG-HAGRPDGQ 60 LLV + + A+ASV M G+R+IYPA A E ++ +N D+ PN VQ+WLD G P+ Sbjct: 16 LLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTPETG 75 Query: 61 ASPFLVIPPVFRIEPHGGQVVRLSYIGAALPQDRESLFFLNFLQVPALKADSVNDNQLVL 120 +PF+V PP FRIE + GQ +RL Y G+ LP DRES+F+LNFLQ+P + DN++++ Sbjct: 76 KAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVE-KDNKMLV 134 Query: 121 TVRSRMKVFYRPPALASEADAARAPAALSFAIDSSDGMASMVVRNGSGYHLMVQQADLVL 180 +R+R+KVFYRP ++ D + AL+F++ + +N +G++ + ++V Sbjct: 135 LLRNRIKVFYRPESIIGRVD--QVSTALTFSLRKQGTNLVLTGKNPTGFYATIASGEIV- 191 Query: 181 GGQAQALARTTVIQPFQELRWPLDHVPADRAGMRMRLRLLNDVG 224 G + ++ +I P ++ W + + + + ++ND G Sbjct: 192 SGSIKLKVKSNMIAPMSQVEWVIPNASVSSSAT-INFLIMNDFG 234 >YPO1921 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 214 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 33/232 (14%) Query: 1 MLLVFLLSAHASASVTMLGTRVIYPADAGEQVLRFSNPDDHPNLVQLWLDDGH-AGRPDG 59 MLL+ +S ASV M GTR+IYP + E+VL+ SN DDHPNLVQLW+DDG+ P Sbjct: 13 MLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSK 72 Query: 60 QASPFLVIPPVFRIEPHGGQVVRLSYIGAALPQDRESLFFLNFLQVPALKADSVNDNQLV 119 PF + P +FR+E + GQVVRL+YI LP++RES+F+LNFLQ+PALKAD++ + Sbjct: 73 SDVPFALTPQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTLGE---- 128 Query: 120 LTVRSRMKVFYRPPALASEADAARAPAALSFAIDSSDGMASMVVRNGSGYHLMVQQADLV 179 +S +D++ G + V N +GY++ ++ A +V Sbjct: 129 ---------------------------KISVTLDTTTG-NKIKVHNPTGYYISLRDAKIV 160 Query: 180 LGGQAQALARTTVIQPFQELRWPLDHVPADRAGMRMRLRLLNDVGVEVPRDY 231 G+ + A + + P L + G + L ++ND G +P +Y Sbjct: 161 SNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNNY 212 >YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 259 Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 8 SAHASASVTMLGTRVIYPADAGEQVLRFSNPDDHPNLVQLWLDDGHAG-RPDGQASPFLV 66 S A A++T+ GTRVI+PA E +R +N P LVQ+W+DDG + PF+V Sbjct: 22 SIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMV 81 Query: 67 IPPVFRIEPHGGQVVRLSYIGAALPQDRESLFFLNFLQVPALKADSVNDNQLVLTVRSRM 126 PPVFR+EP GQ VR+ Y G ALPQ++ES+F+ N L++PA+K + N+L L R+R+ Sbjct: 82 TPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRI 141 Query: 127 KVFYRPPALASEADAARAPAALSFAIDSSDGMASMVVRNGSGYHLMVQQADLVLGGQAQA 186 KVFYRP +L S + A A + D+ G VV N + Y++ + +G ++ Sbjct: 142 KVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVV-NPTPYYISFDSGSITVGAKSVE 200 Query: 187 LARTTVIQPFQE-LRWPLDHVPADRAGMRMRLRLLNDVGVEVPRD 230 + T ++ PF E + +P + + +M ++LND G + + Sbjct: 201 II-TDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEE 244 >PA2129 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae Pseudomonas aeruginosa Length = 248 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 9 AHASASVTMLGTRVIYPADAGEQVLRFSNPDDHPNLVQLWLD-DGHAGRPDGQASPFLVI 67 A A ASV + GTRVIYP +A E+ ++ SN D PN+VQ W+D D PD +PFLV Sbjct: 23 AQARASVVVTGTRVIYPGEAREKTVQLSNRDAFPNVVQAWVDIDAPDAPPDQADAPFLVN 82 Query: 68 PPVFRIEPHGGQVVRLSYIGAALPQDRESLFFLNFLQVPALKADSVNDNQLVLTVRSRMK 127 P VFR+ P GQ +R+ Y G LP DRESLF LN LQ+P + + NQ++L +R+R+K Sbjct: 83 PAVFRMAPDSGQTLRIVYTGQGLPGDRESLFHLNVLQIPPRNSSHADRNQMLLMLRNRLK 142 Query: 128 VFYRPPALASEADAARAPAALSFAIDSSDGMASMVVRNGSGYHLMVQQADLVLGGQAQAL 187 +FYRP + + P L FA+ ++ V N SGY+ A L + GQ + Sbjct: 143 LFYRPAGIQGRPED--LPGQLRFALVRRSAGWAVRVDNPSGYYASFASATLSV-GQRRWR 199 Query: 188 ARTTVIQPFQELRWPLDHVPADRAG-MRMRLRLLNDVGVEV 227 R+ +++P W + A G +R+ L+ND G + Sbjct: 200 LRSGMLEPRSHAEWQAETREALPPGRVRLHALLINDYGAHM 240 >ECs1279 [NU] COG3121 P pilus assembly protein, chaperone PapD Ecs Escherichia coli O157:H7 Length = 233 Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 122/215 (56%), Gaps = 9/215 (4%) Query: 17 MLGTRVIYPADAGEQVLRFSNPDDHPNLVQLWLDDGHAGRPDGQASPFLVIPPVFRIEPH 76 M GTR+I+P DA E+ ++ N D P ++ + ++D R + PF+ P FR+E Sbjct: 26 MTGTRIIFPGDAKEKTIQLRNTSDQPYIINIHVEDE---RGSDKNVPFMPTPQTFRMEAA 82 Query: 77 GGQVVRLSYIGAALPQDRESLFFLNFLQVPALKADSVNDNQLVLTVRSRMKVFYRPPALA 136 GQ +RL Y G LPQDRES+F+ +F Q+P L + + NQL+L + +R+K+FYRP ++ Sbjct: 83 AGQALRLLYTGNNLPQDRESVFWFSFSQLPYLNKNDKSQNQLILALTNRVKIFYRPSSIV 142 Query: 137 SEADAARAPAALSFAIDSSDGMASMVVRNGSGYHLMVQQADLVLGGQAQALARTTVIQPF 196 + ++ AP L++ + + + V N +GY++ ++ A+L+ G+ LA + +I P Sbjct: 143 GK--SSDAPKNLTYQVKQN----RIEVTNPTGYYVTIRAAELLNNGKKVPLANSVMIAPQ 196 Query: 197 QELRWPLDHVPADRAGMRMRLRLLNDVGVEVPRDY 231 W L + G ++ L +ND GV V ++ Sbjct: 197 STTEWTLPSGISVAPGAQIHLVTVNDYGVNVTSEH 231