BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0142.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1621 [TK] COG2197 Response regulator containing a CheY-like r... 214 1e-55 YPO1218 [TK] COG2197 Response regulator containing a CheY-like r... 119 4e-27 STM2270 [TK] COG2197 Response regulator containing a CheY-like r... 119 6e-27 rcsB [TK] COG2197 Response regulator containing a CheY-like rece... 119 7e-27 ECs3106 [TK] COG2197 Response regulator containing a CheY-like r... 119 7e-27 >RSp1621 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 219 Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 115/210 (54%), Positives = 153/210 (72%), Gaps = 1/210 (0%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 I+VGIADD+P+VL G ++L D+ + F+ E+I QL+ L PVDVLLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVLFTCETIEQLLKQLAEHPVDVLLCDYEFESDP 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 QADGL LL+RLRR P +++ LSAH+ P I+S+ L LGA+GFIGK+R+DF NL AV Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRADFGNLAAAVRK 123 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 V G +Y+P SLS+ALL + + + G+ LS RE++VA+M G++I +IA+RL RS Sbjct: 124 VAGGSLYVPGSLSAALLSARYGKHG-MVGVEALSTREVIVAQMTADGLTIGEIADRLKRS 182 Query: 188 PKTISNQKVAAMKKLGVSNDVELSRIFQNL 217 PKTISNQKVAAMKKLGV NDVEL+ + + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLREL 212 >YPO1218 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ype Yersinia pestis Length = 217 Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 117/203 (57%), Gaps = 5/203 (2%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 + V IADD+P+VL GI L + + E L++ L + +VL+ D + D Sbjct: 4 LNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLSKLDANVLITDLSMPGDK 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 DG+ L+K ++R +P + +I L+ + P I+SS L+L G + K + +LP+A+ + Sbjct: 64 YGDGITLIKYIKRHYPDLAIIVLTMNNNPAILSSVLDLDIDGIVLKQGAP-ADLPKALAA 122 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 + G+ + P+S++ L ++A G +LS +E V R+ +G +++IA +LNRS Sbjct: 123 LQKGKKFTPESVAKL----LEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRS 178 Query: 188 PKTISNQKVAAMKKLGVSNDVEL 210 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMLKLGVDNDIAL 201 >STM2270 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sty Salmonella typhimurium LT2 Length = 216 Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 117/203 (57%), Gaps = 5/203 (2%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 + V IADD+P+VL GI L + + E L++ L + VL+ D + D Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 DG+ L+K ++R P++ +I L+ + P I+S+ L+L G + K + +LP+A+ + Sbjct: 64 YGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP-TDLPKALAA 122 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 + G+ + P+S+S L ++A G +LS +E V R+ +G +++IA++LNRS Sbjct: 123 LQKGKKFTPESVSRL----LEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRS 178 Query: 188 PKTISNQKVAAMKKLGVSNDVEL 210 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMMKLGVENDIAL 201 >rcsB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 216 Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 117/203 (57%), Gaps = 5/203 (2%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 + V IADD+P+VL GI L + + E L++ L + VL+ D + D Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 DG+ L+K ++R P++ +I L+ + P I+S+ L+L G + K + +LP+A+ + Sbjct: 64 YGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP-TDLPKALAA 122 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 + G+ + P+S+S L ++A G +LS +E V R+ +G +++IA++LNRS Sbjct: 123 LQKGKKFTPESVSRL----LEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRS 178 Query: 188 PKTISNQKVAAMKKLGVSNDVEL 210 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMMKLGVENDIAL 201 >ECs3106 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ecs Escherichia coli O157:H7 Length = 216 Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 117/203 (57%), Gaps = 5/203 (2%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 + V IADD+P+VL GI L + + E L++ L + VL+ D + D Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 DG+ L+K ++R P++ +I L+ + P I+S+ L+L G + K + +LP+A+ + Sbjct: 64 YGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP-TDLPKALAA 122 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 + G+ + P+S+S L ++A G +LS +E V R+ +G +++IA++LNRS Sbjct: 123 LQKGKKFTPESVSRL----LEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRS 178 Query: 188 PKTISNQKVAAMKKLGVSNDVEL 210 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMMKLGVENDIAL 201