BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0122.p (206 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0714 [H] COG0307 Riboflavin synthase alpha chain Rso Ralstoni... 281 8e-76 PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomon... 183 2e-46 VC2270 [H] COG0307 Riboflavin synthase alpha chain Vch Vibrio ch... 176 2e-44 DR0154 [H] COG0307 Riboflavin synthase alpha chain Dra Deinococc... 165 7e-41 XF0952 [H] COG0307 Riboflavin synthase alpha chain Xfa Xylella f... 159 4e-39 >RSc0714 [H] COG0307 Riboflavin synthase alpha chain Rso Ralstonia solanacearum Length = 217 Score = 281 bits (719), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 145/203 (71%), Positives = 158/203 (77%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIVAA+G I +V PLAA AGVRL I AG LP+ADV LGDSIA+ GACMTVV K Sbjct: 1 MFTGIVAAIGRIETVEPLAADAQAGVRLGIHAGGLPLADVALGDSIAIQGACMTVVAKND 60 Query: 61 SGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 + F VDVSRESL T GLD PGEVNLEKAL LA+ +GGHLVSGHVDGLG V F PVGES Sbjct: 61 THFDVDVSRESLSKTVGLDRPGEVNLEKALRLADHIGGHLVSGHVDGLGTVSHFAPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLK 180 EL V LG+Y AYKGS+VVNGVSLTVN V D A C FSINLIPHT+ VTTLKHL Sbjct: 121 YELRVRTSPELGRYFAYKGSVVVNGVSLTVNSVRDDATGCEFSINLIPHTLAVTTLKHLA 180 Query: 181 AGSKVNLEIDLIARYVERMLSSS 203 G +VNLEIDLIARYVERML+ + Sbjct: 181 VGGQVNLEIDLIARYVERMLTHT 203 >PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomonas aeruginosa Length = 219 Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/202 (49%), Positives = 133/202 (65%), Gaps = 10/202 (4%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGI+ ++G++ ++TP G D +R+ I G L + DV LGDSIA+NG C+T VE Sbjct: 1 MFTGIIESIGSVRAMTP--KGGD--LRVYIATGKLDLGDVKLGDSIAVNGVCLTAVELPG 56 Query: 61 SGFTVDVSRESLRLTA--GLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVG 118 GF DVSRESL TA L VNLEKALT RLGGHLVSGHVDG+G+V E Sbjct: 57 DGFWADVSRESLARTAFQHLKVGSRVNLEKALTPTTRLGGHLVSGHVDGVGEVLKREENA 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKH 178 + + V AP+ L +Y+A+KGSI V+G SLTVN V + F + ++PHT+ T + Sbjct: 117 RAIQFTVRAPRELARYIAHKGSITVDGTSLTVNAV----NGAEFELTIVPHTLSETIMAE 172 Query: 179 LKAGSKVNLEIDLIARYVERML 200 + G +VNLE+DL+ARY+ER+L Sbjct: 173 YQPGRRVNLEVDLLARYLERLL 194 >VC2270 [H] COG0307 Riboflavin synthase alpha chain Vch Vibrio cholerae Length = 217 Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/208 (46%), Positives = 132/208 (63%), Gaps = 10/208 (4%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIV AVG +T++ P G D V +++D G L M DV LGDSIA NG C+TVV Sbjct: 1 MFTGIVEAVGKLTAIIP--KGSD--VTISVDVGKLDMGDVKLGDSIATNGVCLTVVAFDQ 56 Query: 61 SGFTVDVSRESLRLT--AGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVG 118 F+ D+S E+L+ + A VNLEKA+ R GGH+VSGHVDG+G++ PVG Sbjct: 57 RSFSADLSMETLKKSGFAQYQVGDRVNLEKAMLPTTRFGGHIVSGHVDGVGEIVERIPVG 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKH 178 + +L V+ P + KY+A KGSI V+G+SLTVN + A F + ++PHT TT+ Sbjct: 117 RAVDLWVNMPAEISKYVAEKGSITVDGISLTVNDLRKNA----FKLTIVPHTSAETTIDE 172 Query: 179 LKAGSKVNLEIDLIARYVERMLSSSTVS 206 + G +VNLE+D++ARY+ER+L S Sbjct: 173 FQVGRRVNLEVDVLARYMERLLQGQQES 200 >DR0154 [H] COG0307 Riboflavin synthase alpha chain Dra Deinococcus radiodurans Length = 214 Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 97/210 (46%), Positives = 134/210 (63%), Gaps = 16/210 (7%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGI+ +G +T AA + + +TI A + AD+ LG+SIA G C+TV Sbjct: 1 MFTGIIEQIGRVTH----AAEQNGNLAVTI-APTQMWADLVLGESIACGGTCLTVTGWDE 55 Query: 61 SGFTVDVSRESLRLTA-GLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGE 119 F VD+SRE+L TA +A EVNLE+A+T R GGH+VSGHVDG+G+V Sbjct: 56 QSFCVDLSRETLAKTAPHWEAGQEVNLERAMTAQARFGGHIVSGHVDGVGEVLEVREEPG 115 Query: 120 SRELIVDAPKALGKYLAYKGSIVVNGVSLTV--------NRVEDLADACRFSINLIPHTV 171 + + V AP++L KYL KGS+ V+GVSLT+ +R E D F++ L+PHT+ Sbjct: 116 AYTMRVRAPRSLAKYLTPKGSVTVDGVSLTLVDVGGPAGSRPEWPLD--EFTLWLVPHTL 173 Query: 172 EVTTLKHLKAGSKVNLEIDLIARYVERMLS 201 EVTTLKH +AG++VNLE D +A+YVER+L+ Sbjct: 174 EVTTLKHWRAGTRVNLEADQVAKYVERLLA 203 >XF0952 [H] COG0307 Riboflavin synthase alpha chain Xfa Xylella fastidiosa 9a5c Length = 200 Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 122/202 (60%), Gaps = 10/202 (4%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGI+ VG + + + G D VR T + G+LP ++V G+SIA+NG C+TV A Sbjct: 1 MFTGIIGGVGRLAA--RVRQGGD--VRFTFEVGTLPFSEVSYGESIAVNGVCLTVTAFDA 56 Query: 61 SGFTVDVSRESLRLTAGLDAP--GEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVG 118 F D S E+L LT P +NLE+A+ +RLGGHLVSGHVDG+G+V S Sbjct: 57 LCFQADASTETLALTTLGQLPEGATLNLERAMCPTDRLGGHLVSGHVDGIGRVLSVHEDA 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKH 178 ++ P L KY+A KGSI V+GVSLTVN V +A F + LIPHTV T Sbjct: 117 RAQRWSFAVPVPLLKYVAKKGSICVDGVSLTVNAV----NAEGFEVALIPHTVAHTRFSR 172 Query: 179 LKAGSKVNLEIDLIARYVERML 200 G VNLEIDLIARYVER+L Sbjct: 173 TVIGEAVNLEIDLIARYVERLL 194