BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0095.p (266 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family ... 235 9e-62 VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family ... 187 3e-47 XF1626 [KT] COG3279 Response regulator of the LytR/AlgR family X... 125 7e-29 PA5261 [KT] COG3279 Response regulator of the LytR/AlgR family P... 114 2e-25 STM2158 [KT] COG3279 Response regulator of the LytR/AlgR family ... 104 2e-22 >RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family Rso Ralstonia solanacearum Length = 270 Score = 235 bits (599), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 140/272 (51%), Positives = 184/272 (67%), Gaps = 13/272 (4%) Query: 3 APTALIAEDEPLLANALRQALARCWPDL---PAPHLAANGDEALEQALAL-LPDVLFLDI 58 AP LIA+DEP LA++L LA WP PA H + +A+++ A PDV+FLDI Sbjct: 4 APRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVFLDI 63 Query: 59 KMPGRSGLEVAGELADEWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAV 118 +MPG SG+EVA ELA A RP L+VFVTAYD +AL AFE+AA+DY+LKPV +RLA Sbjct: 64 RMPGLSGIEVARELAGR--AQRP--LVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAA 119 Query: 119 TVARLQALLAQR----AASDQDSHLERALAQLRALSAPAVEDAPPRLDYIRAAVGNKVKL 174 TV RL A LA+R AA+D L + + +L L A + L +I+A VG +++ Sbjct: 120 TVRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGANGA-YLRFIKALVGQEIRF 178 Query: 175 IPVDEVIYFEATDKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAA 234 IPV+EV+Y EATDKYVNVV+ G++LIRTSLREL+ QLD + FWQ+HRGTVV V + +A Sbjct: 179 IPVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASA 238 Query: 235 LREESGKLFVTLRDRPEKLAVSRLFAHLFRQM 266 + G+L + +R R E L V+R +AHLFRQM Sbjct: 239 VHLSLGRLALKIRGRTETLPVARQYAHLFRQM 270 >VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family Vch Vibrio cholerae Length = 261 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/265 (42%), Positives = 157/265 (59%), Gaps = 17/265 (6%) Query: 5 TALIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPGRS 64 TA++A+DEPLL + L + LA WP L A NG AL+ PDV+FLDI+MP Sbjct: 7 TAVLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPKMD 66 Query: 65 GLEVAGELADEWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVARLQ 124 G+EVA L + PL+VF+TAYD+YA+ AFE AIDYLLKP+S RLA +LQ Sbjct: 67 GIEVARRLLQQ----PKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQ 122 Query: 125 ALLAQRAASDQDSHLERALAQLRALSAPAVEDAPPRLD-YIRAAVGNKVKLIPVDEVIYF 183 L + A D LAQL + P+ +++A+ G ++ LI V+E++Y Sbjct: 123 QQLRRNVAPSND------LAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNELLYV 176 Query: 184 EATDKYVNVVSAEGSA----LIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALREES 239 +A DKY+++ G+ L+R+SL+EL+ QLD QFWQIHR VV V +I R+ Sbjct: 177 KAEDKYLSLYKVHGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTRDFG 236 Query: 240 GKLFVTLRDRPEKLAVSRLFAHLFR 264 GK++V + DR + L VSR HLF+ Sbjct: 237 GKMWVHI-DRLQ-LPVSRALQHLFK 259 >XF1626 [KT] COG3279 Response regulator of the LytR/AlgR family Xfa Xylella fastidiosa 9a5c Length = 252 Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 125/251 (49%), Gaps = 23/251 (9%) Query: 7 LIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPGRSGL 66 LIA+DEPL LR L L A NG++ L L PD++ +DI MPG GL Sbjct: 5 LIADDEPLARERLRVLLQAQMQHLEVVAEAENGEQVLHDCQRLNPDLVLMDIAMPGIDGL 64 Query: 67 EVAGELADEWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVARLQAL 126 E A L PA P +VF TAY D+AL AF+ AIDYL+KPV +RL + R+Q Sbjct: 65 ETARYLR-HLPA---CPAVVFCTAYGDHALSAFDVEAIDYLMKPVRAERLHAALKRVQTF 120 Query: 127 LAQRAASDQDSHLERALAQLRALSAPAVEDAPPRLDYIRAAVGNKVKLIPVDEVIYFEAT 186 +A R Q S D PR ++ A + ++LIP+D+V Y +A Sbjct: 121 VAGRLREPQTSC-----------------DETPR-THLCARIRGGLRLIPLDQVRYLQAD 162 Query: 187 DKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALREESGKLFVTL 246 +KYV + +G LI SL+ L + R F +IHR ++ ++ R G++ L Sbjct: 163 EKYVVICHEQGEDLIEESLKSLEKEFSDR-FVRIHRNCLIARAELTELRRCSDGQVQAVL 221 Query: 247 RDRPEKLAVSR 257 R+ L VSR Sbjct: 222 RNVVTPLGVSR 232 >PA5261 [KT] COG3279 Response regulator of the LytR/AlgR family Pae Pseudomonas aeruginosa Length = 248 Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 134/259 (51%), Gaps = 31/259 (11%) Query: 5 TALIAEDEPLLANALRQALARCWPDLPAPHL----AANGDEALEQALALLPDVLFLDIKM 60 LI +DEPL R+ LAR L + A+NG+EAL +L PD++ LDI+M Sbjct: 2 NVLIVDDEPLA----RERLARLVGQLDGYRVLEPSASNGEEALTLIDSLKPDIVLLDIRM 57 Query: 61 PGRSGLEVAGELAD-EWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVT 119 PG GL+VA L + E P P ++F TA+D++AL+AF+ +A+ YL+KPV + LA Sbjct: 58 PGLDGLQVAARLCEREAP-----PAVIFCTAHDEFALEAFQVSAVGYLVKPVRSEDLAE- 111 Query: 120 VARLQALLAQRAASDQDSHLERALAQLRALSAPAVEDAPPRLDYIRAAVGNKVKLIPVDE 179 A + AS + QL AL+ P +I A ++LIP++E Sbjct: 112 --------ALKKASRPNR------VQLAALTKPPASGGSGPRSHISARTRKGIELIPLEE 157 Query: 180 VIYFEATDKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALREES 239 VI+F A KYV + A+G L+ L+ L + G +F +IHR +V +I+ R Sbjct: 158 VIFFIADHKYVTLRHAQGEVLLDEPLKALEDEF-GERFVRIHRNALVARERIERLQRTPL 216 Query: 240 GKLFVTLRD-RPEKLAVSR 257 G + L+ + L VSR Sbjct: 217 GHFQLYLKGLDGDALTVSR 235 >STM2158 [KT] COG3279 Response regulator of the LytR/AlgR family Sty Salmonella typhimurium LT2 Length = 239 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 31/245 (12%) Query: 6 ALIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPGRSG 65 LI +DEPL LR L + D+ AN EA+ L PDVLFLDI+MP SG Sbjct: 4 VLIVDDEPLARENLR-ILLQGQDDIEIVGECANAVEAIGAVHKLRPDVLFLDIQMPRISG 62 Query: 66 LEVAGELADEWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVARLQA 125 LE+ G L P RP+ IVF+TA+D+YA++AFE A DYLLKP+ + RL T+ RL Sbjct: 63 LEMVGMLD---PEHRPY--IVFLTAFDEYAIKAFEEHAFDYLLKPIEEKRLEKTLHRL-- 115 Query: 126 LLAQRAASDQDSHLERALAQLRALSAPAVEDAPPRLDYIRAAVGNKVKLIPVDEVIYFEA 185 ++ S QD L P + A L +I +++ L+ +D+V + + Sbjct: 116 ---RQERSKQDVSL-----------LPENQQA---LKFIPCTGHSRIYLLQMDDVAFVSS 158 Query: 186 TDKYVNVVSAEGS-ALIRTSLRELIPQLDGRQ-FWQIHRGTVVQVRQIQAALREESGKLF 243 V V S+EG +LR L+ R + HR +V + +Q E++G+ Sbjct: 159 RMSGVYVTSSEGKEGFTELTLR----TLESRTPLLRCHRQFLVNMAHLQEIRLEDNGQAE 214 Query: 244 VTLRD 248 + LR+ Sbjct: 215 LILRN 219