BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0081.p (403 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1286 [J] COG1187 16S rRNA uridine-516 pseudouridylate synthas... 409 e-114 yciL [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase a... 262 8e-70 STM1719 [J] COG1187 16S rRNA uridine-516 pseudouridylate synthas... 262 9e-70 ZyciL [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase ... 262 9e-70 ECs1841 [J] COG1187 16S rRNA uridine-516 pseudouridylate synthas... 262 9e-70 >RSc1286 [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Rso Ralstonia solanacearum Length = 598 Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/279 (72%), Positives = 225/279 (80%), Gaps = 7/279 (2%) Query: 1 VTSEAYDRDEGAKAGGRQPHQMRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIV 60 V S AYD D A GG P + R+LTAEDDAPKLHK+LADAGLGSRRDME+LI+ Sbjct: 184 VISGAYDAD--ADVGG-APQSTK----VRELTAEDDAPKLHKILADAGLGSRRDMEDLIL 236 Query: 61 AGRVSVNGEPAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPSGEIVSHADPEGR 120 GRVSVNG PAHIGQRILPTD VR+NGKLIQRK+ +PPRVL+YHKP+GEIVS +DPEGR Sbjct: 237 QGRVSVNGLPAHIGQRILPTDQVRVNGKLIQRKLPSKPPRVLLYHKPAGEIVSQSDPEGR 296 Query: 121 SSVFDRLPTMKAGKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGEL 180 +VFD LP MK GKW+AVGRLDFNTEGLL+FTTSGD+ANR MHPRY +EREYAVRTLGEL Sbjct: 297 PTVFDSLPRMKTGKWVAVGRLDFNTEGLLIFTTSGDIANRFMHPRYGVEREYAVRTLGEL 356 Query: 181 EEGMRQKLLSGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVS 240 E RQKLL G+ LDDG A F R ADGGGEGVN WY V + EGRNREVRRMFEAV LTVS Sbjct: 357 PESDRQKLLQGIRLDDGEANFLRCADGGGEGVNHWYHVALTEGRNREVRRMFEAVNLTVS 416 Query: 241 RLIRTRYGAMTLPQTLKRGRWEELEENAVRNLMAACGLE 279 RLIRTRYG+ LP+ LKRGRW+E+ VR LM GL+ Sbjct: 417 RLIRTRYGSFVLPRGLKRGRWQEVSAEDVRGLMGLLGLK 455 >yciL [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Eco Escherichia coli K12 Length = 291 Score = 262 bits (670), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 6/243 (2%) Query: 37 APKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI--LPTDAVRINGKLIQ-RK 93 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P +RI+G LI R+ Sbjct: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 Query: 94 VSKRPPRVLVYHKPSGEIVSHADPEGRSSVFDRLPTMKAGKWLAVGRLDFNTEGLLLFTT 153 +++ RVL Y+KP GE+ + DPEGR +VFDRLP ++ +W+AVGRLD NT GLLLFTT Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Query: 154 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVN 213 G+LANRLMHP +EREYAVR G++++ + L GV+L+DGPA F I GGEG+N Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 Query: 214 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLKRGRWEEL---EENAVR 270 +WY VT+ EGRNREVRR++EAVG+ VSRLIR RYG + LP+ L RG W EL + N +R Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Query: 271 NLM 273 L+ Sbjct: 242 ELV 244 >STM1719 [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Sty Salmonella typhimurium LT2 Length = 291 Score = 262 bits (670), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 134/232 (57%), Positives = 171/232 (73%), Gaps = 3/232 (1%) Query: 37 APKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI--LPTDAVRINGKLIQRKV 94 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P +RI+G LI K Sbjct: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIATLGDRVEVTPGLKIRIDGHLISVKE 61 Query: 95 S-KRPPRVLVYHKPSGEIVSHADPEGRSSVFDRLPTMKAGKWLAVGRLDFNTEGLLLFTT 153 S ++ RVL Y+KP GE+ + DPEGR +VFDRLP ++ +W+AVGRLD NT GLLLFTT Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Query: 154 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVN 213 G+LANRLMHP +EREYAVR G+++E + L GV+L+DGPA F I GGEG+N Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDESKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 Query: 214 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLKRGRWEELE 265 +WY VT+ EGRNREVRR++EAVG+ VSRLIR RYG + LP+ L RG W EL+ Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 >ZyciL [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases EcZ Escherichia coli O157:H7 EDL933 Length = 290 Score = 262 bits (670), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 6/243 (2%) Query: 37 APKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI--LPTDAVRINGKLIQ-RK 93 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P +RI+G LI R+ Sbjct: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 Query: 94 VSKRPPRVLVYHKPSGEIVSHADPEGRSSVFDRLPTMKAGKWLAVGRLDFNTEGLLLFTT 153 +++ RVL Y+KP GE+ + DPEGR +VFDRLP ++ +W+AVGRLD NT GLLLFTT Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Query: 154 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVN 213 G+LANRLMHP +EREYAVR G++++ + L GV+L+DGPA F I GGEG+N Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 Query: 214 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLKRGRWEEL---EENAVR 270 +WY VT+ EGRNREVRR++EAVG+ VSRLIR RYG + LP+ L RG W EL + N +R Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Query: 271 NLM 273 L+ Sbjct: 242 ELV 244 >ECs1841 [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Ecs Escherichia coli O157:H7 Length = 290 Score = 262 bits (670), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 135/243 (55%), Positives = 177/243 (72%), Gaps = 6/243 (2%) Query: 37 APKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI--LPTDAVRINGKLIQ-RK 93 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P +RI+G LI R+ Sbjct: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 Query: 94 VSKRPPRVLVYHKPSGEIVSHADPEGRSSVFDRLPTMKAGKWLAVGRLDFNTEGLLLFTT 153 +++ RVL Y+KP GE+ + DPEGR +VFDRLP ++ +W+AVGRLD NT GLLLFTT Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Query: 154 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVN 213 G+LANRLMHP +EREYAVR G++++ + L GV+L+DGPA F I GGEG+N Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 Query: 214 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLKRGRWEEL---EENAVR 270 +WY VT+ EGRNREVRR++EAVG+ VSRLIR RYG + LP+ L RG W EL + N +R Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Query: 271 NLM 273 L+ Sbjct: 242 ELV 244