BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0075.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1289 [J] COG0532 Translation initiation factor 2 (IF-2  GTPas...   209   1e-54
NMA1897 [J] COG0532 Translation initiation factor 2 (IF-2  GTPas...   188   2e-48
NMB1643 [J] COG0532 Translation initiation factor 2 (IF-2  GTPas...   187   5e-48
VC0643 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase...   174   4e-44
STM3286 [J] COG0532 Translation initiation factor 2 (IF-2  GTPas...   172   1e-43

>RSc1289 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase) Rso
          Length = 964

 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 115/127 (90%)

Query: 1   VDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVLEGLV 60
           +DIRYYNIIYDAVDEVKAAMSGMLSPEK+E+  GLVE+RQVF V KVG++AGC VL+G+V
Sbjct: 838 IDIRYYNIIYDAVDEVKAAMSGMLSPEKKEETTGLVEVRQVFHVPKVGAVAGCMVLDGVV 897

Query: 61  KRGSQVRLLRNNVVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLEIFEV 120
           KR S VR+LR NVV+++GEL+SLKRFKDDVKEVK GFECGLS+K +ND++ GDQLEI+E+
Sbjct: 898 KRSSLVRVLRENVVIFSGELESLKRFKDDVKEVKQGFECGLSIKNFNDVKEGDQLEIYEI 957

Query: 121 QEVARTL 127
            EVARTL
Sbjct: 958 TEVARTL 964


>NMA1897 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase) NmA
          Length = 962

 Score =  188 bits (478), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/127 (73%), Positives = 109/127 (85%)

Query: 1   VDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVLEGLV 60
           V+IRYYNIIYDA+D+VKAAMSGMLSPE++EQ  G VEIRQV  VSKVG+IAGC V +G+V
Sbjct: 836 VEIRYYNIIYDAIDDVKAAMSGMLSPEEKEQVTGTVEIRQVISVSKVGNIAGCMVTDGVV 895

Query: 61  KRGSQVRLLRNNVVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLEIFEV 120
           KR S  RL+RNNVV+ TGEL SLKR+KDDVKEV+ GFECGL +KGYN+I  GDQLE F++
Sbjct: 896 KRDSHARLIRNNVVIHTGELSSLKRYKDDVKEVRMGFECGLMIKGYNEIMEGDQLECFDI 955

Query: 121 QEVARTL 127
            EVARTL
Sbjct: 956 VEVARTL 962


>NMB1643 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase) Nme
          Length = 962

 Score =  187 bits (475), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 93/127 (73%), Positives = 110/127 (86%)

Query: 1   VDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVLEGLV 60
           V+IRYYNIIYDA+++VKAAMSGMLSPE++EQ  G VEIRQV  VSKVG+IAGC V +G+V
Sbjct: 836 VEIRYYNIIYDAINDVKAAMSGMLSPEEKEQVTGTVEIRQVISVSKVGNIAGCMVTDGVV 895

Query: 61  KRGSQVRLLRNNVVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLEIFEV 120
           KR S VRL+RNNVV+ TGEL SLKR+KDDVKEV+ GFECGL LKGYN+I  GDQLE F++
Sbjct: 896 KRDSHVRLIRNNVVIHTGELASLKRYKDDVKEVRMGFECGLMLKGYNEIMEGDQLECFDI 955

Query: 121 QEVARTL 127
            EVAR+L
Sbjct: 956 VEVARSL 962


>VC0643 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase) Vch
          Length = 898

 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 105/127 (82%)

Query: 1   VDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVLEGLV 60
           +D+RYY+IIY  +DEVK AMSGMLSPE +++ +GL E+R VF   K+G+IAGC V EG++
Sbjct: 771 IDLRYYSIIYQLIDEVKQAMSGMLSPEFKQEIIGLAEVRDVFKSPKLGAIAGCMVTEGVI 830

Query: 61  KRGSQVRLLRNNVVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLEIFEV 120
           KR + +R+LR+NVV++ GEL+SL+RFKDDV EVK+G+ECG+ +K YND+ VGDQ+E+FE 
Sbjct: 831 KRNAPIRVLRDNVVIYEGELESLRRFKDDVAEVKNGYECGIGVKNYNDVRVGDQIEVFET 890

Query: 121 QEVARTL 127
            E+ RT+
Sbjct: 891 IEIQRTI 897


>STM3286 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase) Sty
          Length = 892

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 104/127 (81%)

Query: 1   VDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVLEGLV 60
           +D+RYY++IY+ +DEVKAAMSGMLSPE ++Q +GL E+R VF   K G+IAGC V EG +
Sbjct: 765 LDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTI 824

Query: 61  KRGSQVRLLRNNVVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLEIFEV 120
           KR + +R+LR+NVV++ GEL+SL+RFKDDV EV++G ECG+ +K YND+ VGD +E+FE+
Sbjct: 825 KRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEI 884

Query: 121 QEVARTL 127
            E+ RT+
Sbjct: 885 IEIQRTI 891