BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0059.p         (186 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene acti...   132   5e-31
AGpA717 [T] COG0664 cAMP-binding proteins - catabolite gene acti...   101   8e-22
SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    89   7e-18
mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    79   7e-15

>sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Syn
           Synechocystis
          Length = 238

 Score =  132 bits (332), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 97/173 (56%)

Query: 3   YFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTA 62
           YFP   +IS++S+ +     E+ ++G EGM G+P  LG K T     V   G AW +S  
Sbjct: 50  YFPNTAMISVVSIMEDGSTTEIGLIGNEGMVGLPIILGGKQTTSQVIVQVQGEAWKLSAH 109

Query: 63  AFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFS 122
               E  Q+  LQ +L  Y    + Q+  +  C + H + ERLA+WL+   D     E  
Sbjct: 110 ILLREFEQSPQLQRILLLYTQARLTQVSQSAACNRQHKIEERLARWLMSVHDCLQVDEIP 169

Query: 123 ITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCY 175
           +TQE +A++LGVRR G+T AA  L+ +G+I Y RG +T+L+   L+K +C CY
Sbjct: 170 LTQEFVANMLGVRRSGVTIAANSLQQSGMITYRRGKITLLDYDALKKTSCECY 222


>AGpA717 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 248

 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 94/183 (51%)

Query: 4   FPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTAA 63
           F  +GL S +   D   + E  +VGREG+ G P  LG ++T     +   GR + I+T  
Sbjct: 51  FIESGLASTIVRDDGGKSIETVLVGREGITGWPALLGAETTPSETIMCVGGRGFLITTVE 110

Query: 64  FRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFSI 123
            R  ++++  L+ +L  YINI + Q+         + L ERLA+WLLM  DR +     I
Sbjct: 111 IRRAMDEDTRLRELLLGYINICLLQVGHLVLANGQYGLRERLARWLLMCHDRLDTDNLPI 170

Query: 124 TQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLYT 183
           T E L+++LGVRR GIT     L     I   RG+V I+NR  LE+ A   Y    K Y 
Sbjct: 171 THEFLSTVLGVRRPGITNELHVLEGIHAIRARRGNVRIINRSILEEVATITYGAPEKEYE 230

Query: 184 KTL 186
           + +
Sbjct: 231 RLM 233


>SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Sme
           Sinorhizobium meliloti
          Length = 238

 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%)

Query: 2   IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61
           +Y+  +G+ S+++        E  + G EG      A+G++ +     +   G A+ +  
Sbjct: 50  VYYLTSGIGSLVASTPEGNKAEAGIFGSEGYIPTSAAMGVELSVHDIIMQIEGNAYRMEF 109

Query: 62  AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121
           +AFR  +++N+    V+ R I     QL  T      H + ERLA+WLLM  DR +  E 
Sbjct: 110 SAFRKWMDRNRNFARVMIRCIEAFSIQLTYTAISNALHGVDERLARWLLMCHDRVSGDEI 169

Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCY 175
            +T E ++ +L VRR  +T +   L  NG I  +RG++ I NR+ LE+ A   Y
Sbjct: 170 PLTHEFISLMLAVRRPSVTTSLHVLEGNGFIRSNRGNIIIRNRQALEEFARDAY 223


>mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Mlo
           Mesorhizobium loti
          Length = 243

 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 83/183 (45%)

Query: 2   IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61
           +YF   G+ S+++   +  + E+  +G EGM G    +G         V   G A  I  
Sbjct: 53  VYFIEQGIGSVVASTASGHDAEIGFIGFEGMTGSALVMGDDRAAHACFVQLEGEAIRIDA 112

Query: 62  AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121
           A F   L  +  L+L L  ++N +  Q   T        L ERLA+WLLM  DR   +  
Sbjct: 113 APFNAALAASPTLRLFLLHFVNTLHTQTGCTALVNARLKLEERLARWLLMCDDRVPGESL 172

Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181
           ++T E L+ +LGVRR G+T A   L    +I   RG + I +R  L + A   Y      
Sbjct: 173 AMTHEFLSIMLGVRRPGVTVALQLLEGRALIRSRRGEIVIRDRAGLLELANGGYGQAEAE 232

Query: 182 YTK 184
           Y +
Sbjct: 233 YAR 235