BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0040.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 304 2e-82 yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 232 9e-61 ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 231 1e-60 ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 231 1e-60 STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 226 7e-59 >RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 304 bits (778), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 160/297 (53%), Positives = 207/297 (69%), Gaps = 5/297 (1%) Query: 3 LTLESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPA 62 L+LESL +LD I+RKGSFAAAA L +VPSALTY VRKLEDDLDVLLFDRR HRA+LTPA Sbjct: 3 LSLESLEVLDAIERKGSFAAAAHELGKVPSALTYVVRKLEDDLDVLLFDRRRHRAELTPA 62 Query: 63 GLQLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGT 122 G LL EGRHLL AA +L +RVKR ATG E L IV++ L+ F ++PVI+ F E + T Sbjct: 63 GRALLDEGRHLLQAADELARRVKRLATGWEATLTIVMDDLVHFRALMPVIQDFYAENTAT 122 Query: 123 RLRFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHP 182 RLRF VL G+W+ L+ GRA+L+I GP + Q + LG + +VFAVA HP Sbjct: 123 RLRFCREVLAGSWDALLSGRADLLI-----GPAHIAPVQGVQTRPLGEIPFVFAVAAHHP 177 Query: 183 LASATEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGC 242 LA EPL A + HR +AVGD S++LP T+G+++GQ+TL V +ADK+QAQ+ GLGC Sbjct: 178 LAQLEEPLPASAIARHRIVAVGDTSRNLPPRTVGIMAGQDTLVVPAMADKVQAQIRGLGC 237 Query: 243 GHLPRIWAEPYLATGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWFIQHLAQPHVS 299 G LPR A+PYL +G LV K T+ + NF +AW +GK+L+W++ L P ++ Sbjct: 238 GWLPRPLAQPYLDSGVLVAKATVEDRRAGNFQIAWRTNMRGKALQWWVDKLEDPRLA 294 >yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 316 Score = 232 bits (591), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 119/285 (41%), Positives = 180/285 (63%), Gaps = 4/285 (1%) Query: 5 LESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGL 64 L+ L+ILD ++++GSFAAA+ L + PSAL+Y+V KLE DL++ L DR GHRA+ T G Sbjct: 12 LDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGK 71 Query: 65 QLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRL 124 LL++GR +L +LE++ + G E EL I ++ PF + P+IEAF + S TRL Sbjct: 72 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHSVTRL 131 Query: 125 RFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLA 184 +F GVL G+W+ L +GRA++++G + P +S F LG ++ VFAVAP HPLA Sbjct: 132 KFINGVLGGSWDALTQGRADIIVGAMHEPP----SSSEFGFSRLGDLEQVFAVAPHHPLA 187 Query: 185 SATEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGH 244 EPL+ +++ +RAI VGD +Q+ + LL QE +TV KL+ Q++GLGCG+ Sbjct: 188 LEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGY 247 Query: 245 LPRIWAEPYLATGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWF 289 LPR A+ +L +GAL+EK+ +A + + W + G + W+ Sbjct: 248 LPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 316 Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/285 (41%), Positives = 180/285 (63%), Gaps = 4/285 (1%) Query: 5 LESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGL 64 L+ L+ILD ++++GSFAAA+ L + PSAL+Y+V KLE DL++ L DR GHRA+ T G Sbjct: 12 LDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGK 71 Query: 65 QLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRL 124 LL++GR +L +LE++ + G E EL I ++ PF + P+IEAF + + TRL Sbjct: 72 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHNVTRL 131 Query: 125 RFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLA 184 +F GVL G+W+ L +GRA++++G + P +S F LG ++ VFAVAP HPLA Sbjct: 132 KFINGVLGGSWDALTQGRADIIVGAMHEPP----SSSEFGFSRLGDLEQVFAVAPHHPLA 187 Query: 185 SATEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGH 244 EPL+ +++ +RAI VGD +Q+ + LL QE +TV KL+ Q++GLGCG+ Sbjct: 188 QEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGY 247 Query: 245 LPRIWAEPYLATGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWF 289 LPR A+ +L +GAL+EK+ +A + + W + G + W+ Sbjct: 248 LPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 316 Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/285 (41%), Positives = 180/285 (63%), Gaps = 4/285 (1%) Query: 5 LESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGL 64 L+ L+ILD ++++GSFAAA+ L + PSAL+Y+V KLE DL++ L DR GHRA+ T G Sbjct: 12 LDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGK 71 Query: 65 QLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRL 124 LL++GR +L +LE++ + G E EL I ++ PF + P+IEAF + + TRL Sbjct: 72 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHNVTRL 131 Query: 125 RFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLA 184 +F GVL G+W+ L +GRA++++G + P +S F LG ++ VFAVAP HPLA Sbjct: 132 KFINGVLGGSWDALTQGRADIIVGAMHEPP----SSSEFGFSRLGDLEQVFAVAPHHPLA 187 Query: 185 SATEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGH 244 EPL+ +++ +RAI VGD +Q+ + LL QE +TV KL+ Q++GLGCG+ Sbjct: 188 QEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGY 247 Query: 245 LPRIWAEPYLATGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWF 289 LPR A+ +L +GAL+EK+ +A + + W + G + W+ Sbjct: 248 LPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 119/285 (41%), Positives = 176/285 (61%), Gaps = 4/285 (1%) Query: 5 LESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGL 64 L+ L+ILD ++++GSFAAA+ L + PSAL+Y+V KLE+DL++ L DR GHRA+ T G Sbjct: 5 LDVLIILDALEKEGSFAAASAKLFKTPSALSYTVHKLENDLNIQLLDRSGHRARFTRTGK 64 Query: 65 QLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRL 124 LL++GR +L +LE++ + G E EL I ++ PF + P+I+AF + S TRL Sbjct: 65 MLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIDAFYQRHSVTRL 124 Query: 125 RFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLA 184 +F GVL G+WE L +GRA++++G P F LG ++ VFAVAP HPL Sbjct: 125 KFVNGVLGGSWETLTQGRADIIVGAMRAPP----PDTGFGFARLGDLELVFAVAPHHPLV 180 Query: 185 SATEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGH 244 EPLS + ++ RAI VGD+ S ++ LL QE +TV KL+ Q++GLGCG+ Sbjct: 181 HEEEPLSRQTIKRFRAIVVGDSVHSSRSIGSELLDAQEAITVFDFKTKLELQISGLGCGY 240 Query: 245 LPRIWAEPYLATGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWF 289 LPR A+ +L +GAL+EK+ +A + V W + G + W+ Sbjct: 241 LPRYLAQRFLESGALIEKKVVAQIVYEPVWVGWNEQTAGLASGWW 285