BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0122.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1534 [TK] COG0745 Response regulators consisting of a CheY-li...    66   2e-11
VC0719 [TK] COG0745 Response regulators consisting of a CheY-lik...    61   7e-10

>RSc1534 [TK] COG0745 Response regulators consisting of a CheY-like
          receiver domain and a winged-helix DNA-binding domain
          Rso Ralstonia solanacearum
          Length = 237

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 1  MVEDEPSIAELLRFTMQGAGFATTIATDVAQARKLIAESLPHVVLLDWMLPDSSGLVLLS 60
          +VEDEP+IAEL+   +Q AG     A +  QA  L+++ LP +VLLDWMLP  SG++   
Sbjct: 7  VVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMFAK 66

Query: 61 ELRRDQRRMTRXPPRAWKKTRS 82
          ELR ++R  TR  P      RS
Sbjct: 67 ELRANER--TRQIPIIMLTARS 86


>VC0719 [TK] COG0745 Response regulators consisting of a CheY-like
          receiver domain and a winged-helix DNA-binding domain
          Vch Vibrio cholerae
          Length = 229

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 1  MVEDEPSIAELLRFTMQGAGFATTIATDVAQARKLIAESLPHVVLLDWMLPDSSGLVLLS 60
          +VEDE  I E+L F ++  G+    A D   A   +AE  P +VLLDWMLP  SG+ L+ 
Sbjct: 7  VVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINLIK 66

Query: 61 ELRRDQRRMTRXPP 74
           ++R++  MTR  P
Sbjct: 67 HMKREE--MTRNIP 78